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2024 Articolo in rivista metadata only access

Deflating Invariant Subspaces for Rank Structured Pencils

Nicola Mastronardi ; Marc Van Barel ; Raf Vandebril ; Paul Van Dooren

It is known that executing a perfect shifted QR step via the implicit QR algorithm may not result in a deflation of the perfect shift. Typically, several steps are required before deflation actually takes place. This deficiency can be remedied by determining the similarity transformation via the associated eigenvector. Similar techniques have been deduced for the QZ algorithm and for the rational QZ algorithm. In this paper we present a similar approach for executing a perfect shifted QZ step on a general rank structured pencil instead of a specific rank structured one, e.g., a Hessenberg--Hessenberg pencil. For this, we rely on the rank structures present in the transformed matrices. A theoretical framework is presented for dealing with general rank structured \rev{pencils} and deflating subspaces. We present the corresponding algorithm allowing} to deflate simultaneously a block of eigenvalues rather than a single one. We define the level-rho poles and show that these poles are maintained executing the deflating algorithm. Numerical experiments illustrate the robustness of the presented approach showing the importance of using the improved scaled residual approach.

deflating subspace; rank structured pencil; perfect shift
2024 Articolo in rivista restricted access

Inverting the Fundamental Diagram and Forecasting Boundary Conditions: How Machine Learning Can Improve Macroscopic Models for Traffic Flow

In this paper, we develop new methods to join machine learning techniques and macroscopic differential models, aimed at estimate and forecast vehicular traffic. This is done to complement respective advantages of data-driven and model-driven approaches. We consider here a dataset with flux and velocity data of vehicles moving on a highway, collected by fixed sensors and classified by lane and by class of vehicle. By means of a machine learning model based on an LSTM recursive neural network, we extrapolate two important pieces of information: (1) if congestion is appearing under the sensor, and (2) the total amount of vehicles which is going to pass under the sensor in the next future (30 min). These pieces of information are then used to improve the accuracy of an LWR-based first-order multi-class model describing the dynamics of traffic flow between sensors. The first piece of information is used to invert the (concave) fundamental diagram, thus recovering the density of vehicles from the flux data, and then inject directly the density datum in the model. This allows one to better approximate the dynamics between sensors, especially if an accident/bottleneck happens in a not monitored stretch of the road. The second piece of information is used instead as boundary conditions for the equations underlying the traffic model, to better predict the total amount of vehicles on the road at any future time. Some examples motivated by real scenarios will be discussed. Real data are provided by the Italian motorway company Autovie Venete S.p.A.

traffic vehicles fundamental diagram LWR model machine learning LSTM
2024 Articolo in rivista open access

EEGManyPipelines: A Large-scale, Grassroots Multi-analyst Study of Electroencephalography Analysis Practices in the Wild

Darinka Trübutschek ; Yu-Fang Yang ; Claudia Gianelli ; Elena Cesnaite ; Nastassja L. Fischer ; Mikkel C. Vinding ; Tom R. Marshall ; Johannes Algermissen ; Annalisa Pascarella ; Tuomas Puoliväli ; Andrea Vitale ; Niko A. Busch ; Gustav Nilsonne

The ongoing reproducibility crisis in psychology and cognitive neuroscience has sparked increasing calls to re-evaluate and reshape scientific culture and practices. Heeding those calls, we have recently launched the EEGManyPipelines project as a means to assess the robustness of EEG research in naturalistic conditions and experiment with an alternative model of conducting scientific research. One hundred sixty-eight analyst teams, encompassing 396 individual researchers from 37 countries, independently analyzed the same unpublished, representative EEG data set to test the same set of predefined hypotheses and then provided their analysis pipelines and reported outcomes. Here, we lay out how large-scale scientific projects can be set up in a grassroots, community-driven manner without a central organizing laboratory. We explain our recruitment strategy, our guidance for analysts, the eventual outputs of this project, and how it might have a lasting impact on the field.

EEG reproducility data analysis
2024 Articolo in rivista metadata only access

Some considerations on numerical methods for Cauchy singular integral equations on the real line

MR Capobianco ; G Criscuolo

Two different direct methods are proposed to solve Cauchy singular integral equations on the real line. The aforementioned methods differ in order to be able to prove their convergence which depends on the smoothness of the known term function in the integral equation.

Hilbert transform singular integral equation Hermite weight
2024 Articolo in rivista open access

Lagrangian statistics of concentrated emulsions

I Girotto ; A Scagliarini ; R Benzi ; F Toschi

The dynamics of stabilised concentrated emulsions presents a rich phenomenology including chaotic emulsification, non-Newtonian rheology and ageing dynamics at rest. Macroscopic rheology results from the complex droplet microdynamics and, in turn, droplet dynamics is influenced by macroscopic flows via the competing action of hydrodynamic and interfacial stresses, giving rise to a complex tangle of elastoplastic effects, diffusion, breakups and coalescence events. This tight multiscale coupling, together with the daunting challenge of experimentally investigating droplets under flow, has hindered the understanding of concentrated emulsions dynamics. We present results from three-dimensional numerical simulations of emulsions that resolve the shape and dynamics of individual droplets, along with the macroscopic flows. We investigate droplet dispersion statistics, measuring probability density functions (p.d.f.s) of droplet displacements and velocities, changing the concentration, in the stirred and ageing regimes. We provide the first measurements, in concentrated emulsions, of the relative droplet–droplet separations p.d.f. and of the droplet acceleration p.d.f., which becomes strongly non-Gaussian as the volume fraction is increased above the jamming point. Cooperative effects, arising when droplets are in contact, are argued to be responsible of the anomalous superdiffusive behaviour of the mean square displacement and of the pair separation at long times, in both the stirred and in the ageing regimes. This superdiffusive behaviour is reflected in a non-Gaussian pair separation p.d.f., whose analytical form is investigated, in the ageing regime, by means of theoretical arguments. This work paves the way to developing a connection between Lagrangian dynamics and rheology in concentrated emulsions.

Rheology; Fluid Dynamics; Multiphase flows; Turbulent flows; Mathematical Modelling
2024 Articolo in rivista open access

On solving some Cauchy singular integral equations by de la Vallée Poussin filtered approximation

Occorsio D ; Russo MG ; Themistoclakis W

The paper deals with the numerical solution of Cauchy Singular Integral Equations based on some non standard polynomial quasi-projection of de la Vallée Poussin type. Such kind of approximation presents several advantages over classical Lagrange interpolation such as the uniform boundedness of the Lebesgue constants, the near-best order of uniform convergence to any continuous function, and a strong reduction of Gibbs phenomenon. These features will be inherited by the proposed numerical method which is stable and convergent, and provides a near-best polynomial approximation of the sought solution by solving a well conditioned linear system. The numerical tests confirm the theoretical error estimates and, in case of functions subject to Gibbs phenomenon, they show a better local approximation compared with analogous Lagrange projection methods.

Cauchy singular integral equations Polynomial approximation De la Vallée Poussin approximation
2024 Articolo in rivista open access

Why diffusion-based preconditioning of Richards equation works: spectral analysis and computational experiments at very large scale.

We consider here a cell-centered finite difference approximation of the Richards equation in three dimensions, averaging for interface values the hydraulic conductivity, a highly nonlinear function, by arithmetic, upstream and harmonic means. The nonlinearities in the equation can lead to changes in soil conductivity over several orders of magnitude and discretizations with respect to space variables often produce stiff systems of differential equations. A fully implicit time discretization is provided by backward Euler one-step formula; the resulting nonlinear algebraic system is solved by an inexact Newton Armijo-Goldstein algorithm, requiring the solution of a sequence of linear systems involving Jacobian matrices. We prove some new results concerning the distribution of the Jacobians eigenvalues and the explicit expression of their entries. Moreover, we explore some connections between the saturation of the soil and the ill conditioning of the Jacobians. The information on eigenvalues justifies the effectiveness of some preconditioner approaches which are widely used in the solution of Richards equation. We also propose a new software framework to experiment with scalable and robust preconditioners suitable for efficient parallel simulations at very large scales. Performance results on a literature test case show that our framework is very promising in the advance toward realistic simulations at extreme scale.

algebraic multigrid spectral analysis Richards equation high performance computing
2024 Articolo in rivista restricted access

A long-time behavior preserving numerical scheme for age-of-infection epidemic models with heterogeneous mixing

In this manuscript we propose a numerical method for non-linear integro-differential systems arising in age-of-infection models in a heterogeneously mixed population. The discrete scheme is based on direct quadrature methods and provides an unconditionally positive and bounded solution. Furthermore, we prove the existence of the numerical final size of the epidemic and show that it tends to its continuous equivalent as the discretization steplength vanishes.

Epidemic models Volterra integro-differential equations Direct quadrature methods Dynamical preservation
2024 Articolo in rivista open access

On computing modified moments for half-range Hermite weights

In this paper we consider the computation of the modified moments for the system of Laguerre polynomials on the real semiaxis with the Hermite weight. These moments can be used for the computation of integrals with the Hermite weight on the real semiaxis via product rules. We propose a new computational method based on the construction of the null-space of a rectangular matrix derived from the three-term recurrence relation of the system of orthonormal Laguerre polynomials.It is shown that the proposed algorithm computes the modified moments with high relative accuracy and linear complexity.Numerical examples illustrate the effectiveness of the proposed method.

Null-space Gaussian quadrature rule modified moments product rule
2024 Articolo in rivista open access

Rational QZ Steps with perfect shifts

Nicola Mastronardi ; Marc Van Barel ; Raf Vandebril ; Paul Van Dooren

In this paper we analyze the stability of the problem of performing a rational QZ$step with a shift that is an eigenvalue of a given regular pencil H-lambda K in unreduced Hessenberg-Hessenberg form. In exact arithmetic, the backward rational QZ step moves the eigenvalue to the top of the pencil, while the rest of the pencil is maintained in Hessenberg-Hessenberg form, which then yields a deflation of the given shift. But in finite-precision the rational QZ step gets ``blurred'' and precludes the deflation of the given shift at the top of the pencil. In this paper we show that when we first compute the corresponding eigenvector to sufficient accuracy, then the rational QZ step can be constructed using this eigenvector, so that the exact deflation is also obtained in finite-precision.

generalized eigenvalues perfect shift RQZ algorithm
2024 Articolo in rivista restricted access

Growth regimes in three-dimensional phase separation of liquid-vapor systems

Negro, G. ; Gonnella, G. ; Lamura, A. ; Busuioc, S. ; Sofonea, V.

: The liquid-vapor phase separation is investigated via lattice Boltzmann simulations in three dimensions. After expressing length and time scales in reduced physical units, we combined data from several large simulations (on 512^{3} nodes) with different values of viscosity, surface tension, and temperature, to obtain a single curve of rescaled length l[over ̂] as a function of rescaled time t[over ̂]. We find evidence of the existence of kinetic and inertial regimes with growth exponents α_{d}=1/2 and α_{i}=2/3 over several time decades, with a crossover from α_{d} to α_{i} at t[over ̂]≃1. This allows us to rule out the existence of a viscous regime with α_{v}=1 in three-dimensional liquid-vapor isothermal phase separation, differently from what happens in binary fluid mixtures. An in-depth analysis of the kinetics of the phase separation process, as well as a characterization of the morphology and the flow properties, are further presented in order to provide clues into the dynamics of the phase-separation process.

matematica applicata
2024 Rapporto tecnico open access

Analisi e Monitoraggio dei dati economico-finanziari della ricerca cofinanziata presso l’Istituto per le Applicazioni del Calcolo “Mauro Picone” del Consiglio Nazionale delle Ricerche nel periodo 2013-2023

Raccolta, analisi e monitoraggio dei dati economico-finanziari relativi ai progetti comunitari e nazionali con il fine di creare un metodo standardizzato di analisi e monitoraggio dei flussi delle entrate/uscite presso l’Istituto per le Applicazioni del Calcolo “Mauro Picone” e relative sedi secondarie” ha l’obiettivo di analizzare l’andamento dei finanziamenti nazionali ed europei nell’ultimo decennio di attività dell’IAC-CNR (dal 2013 al 2023) con il fine di ottimizzare la gestione della cassa, dare un migliore servizio di pianificazione e controllo, e generare un sistema di misurazione della performance finanziaria dell’Istituto per le Applicazioni del Calcolo “Mauro Picone” e relative sedi secondarie.

analisi, monitoraggio, progetti di ricerca
2024 Articolo in rivista open access

Glucagon-like peptide-1 and interleukin-6 interaction in response to physical exercise: An in-silico model in the framework of immunometabolism

Morettini, Micaela ; Palumbo, Maria Concetta ; Bottiglione, Alessandro ; Danieli, Andrea ; Del Giudice, Simone ; Burattini, Laura ; Tura, Andrea

Background and objective: Glucagon-like peptide 1 (GLP-1) is classically identified as an incretin hormone, secreted in response to nutrient ingestion and able to enhance glucose-stimulated insulin secretion. However, other stimuli, such as physical exercise, may enhance GLP-1 plasma levels, and this exercise-induced GLP-1 secretion is mediated by interleukin-6 (IL-6), a cytokine secreted by contracting skeletal muscle. The aim of the study is to propose a mathematical model of IL-6-induced GLP-1 secretion and kinetics in response to physical exercise of moderate intensity. Methods: The model includes the GLP-1 subsystem (with two pools: gut and plasma) and the IL-6 subsystem (again with two pools: skeletal muscle and plasma); it provides a parameter of possible clinical relevance representing the sensitivity of GLP-1 to IL-6 (k0). The model was validated on mean IL-6 and GLP-1 data derived from the scientific literature and on a total of 100 virtual subjects. Results: Model validation provided mean residuals between 0.0051 and 0.5493 pg⋅mL-1 for IL-6 (in view of concentration values ranging from 0.8405 to 3.9718 pg⋅mL-1) and between 0.0133 and 4.1540 pmol⋅L-1 for GLP-1 (in view of concentration values ranging from 0.9387 to 17.9714 pmol⋅L-1); a positive significant linear correlation (r = 0.85, p<0.001) was found between k0 and the ratio between areas under GLP-1 and IL-6 curve, over the virtual subjects. Conclusions: The model accurately captures IL-6-induced GLP-1 kinetics in response to physical exercise.

Compartmental model Exercise immunometabolism Inter-organ crosstalk Monte Carlo simulation Myokine Parameter estimation
2024 restricted access

On the adaptive Lasso estimator of AR(p) time series with applications to INAR(p) and Hawkes processes

Calcolo stimatore Lasso per processi di Hawkes

Lasso
2024 Articolo in rivista open access

Two Slope Functions Minimizing Fractional Seminorms and Applications to Misfit Dislocations

De Luca, Lucia ; Ponsiglione, Marcello ; Spadaro, Emanuele

We consider periodic piecewise affine functions, defined on the real line, with two given slopes, one positive and one negative, and prescribed length scale of the intervals where the slope is negative. We prove that, in such a class, the minimizers of s-fractional Gagliardo seminorm densities, with 0<1/2, are in fact periodic with the minimal possible period determined by the prescribed slopes and length scale. Then, we determine the asymptotic behavior of the energy density as the ratio between the length of the two intervals, where the slope is constant, vanishes. Our results, for s=1/2, have relevant applications to the van der Merwe theory of misfit dislocations at semicoherent straight interfaces. We consider two elastic materials having different elastic coefficients and casting parallel lattices having different spacing. As a byproduct of our analysis, we prove the periodicity of optimal dislocation configurations and we provide the sharp asymptotic energy density in the semicoherent limit as the ratio between the two lattice spacings tends to one.

fractional seminorms periodic minimizers misfit dislocations
2024 Articolo in rivista open access

Semidiscrete Modeling of Systems of Wedge Disclinations and Edge Dislocations via the Airy Stress Function Method

Cesana, Pierluigi ; De Luca, Lucia ; Morandotti, Marco

We present a variational theory for lattice defects of rotational and translational type. We focus on finite systems of planar wedge disclinations, disclination dipoles, and edge dislocations, which we model as the solutions to minimum problems for isotropic elastic energies under the constraint of kinematic incompatibility. Operating under the assumption of planar linearized kinematics, we formulate the mechanical equilibrium problem in terms of the Airy stress function, for which we introduce a rigorous analytical formulation in the context of incompatible elasticity. Our main result entails the analysis of the energetic equivalence of systems of disclination dipoles and edge dislocations in the asymptotics of their singular limit regimes. By adopting the regularization approach via core radius, we show that, as the core radius vanishes, the asymptotic energy expansion for disclination dipoles coincides with the energy of finite systems of edge dislocations. This proves that Eshelby’s kinematic characterization of an edge dislocation in terms of a disclination dipole is exact also from the energetic standpoint.

2024 Articolo in rivista open access

Γ-convergence analysis of the nonlinear self-energy induced by edge dislocations in semi-discrete and discrete models in two dimensions

Alicandro, Roberto ; De Luca, Lucia ; Palombaro, Mariapia ; Ponsiglione, Marcello

We propose nonlinear semi-discrete and discrete models for the elastic energy induced by a finite system of edge dislocations in two dimensions. Within the dilute regime, we analyze the asymptotic behavior of the nonlinear elastic energy, as the core-radius (in the semi-discrete model) and the lattice spacing (in the purely discrete one) vanish. Our analysis passes through a linearization procedure within the rigorous framework of Γ-convergence.

dislocations nonlinear elasticity plasticity discrete-to-continuum limits
2024 Articolo in rivista restricted access

Excluded volume effects on tangentially driven active ring polymers

The conformational and dynamical properties of active ring polymers are studied by numerical simulations. The two-dimensionally confined polymer is modeled as a closed bead-spring chain, driven by tangential forces, put in contact with a heat bath described by the Brownian multiparticle collision dynamics. Both phantom polymers and chains comprising excluded volume interactions are considered for different bending rigidities. The size and shape are found to be dependent on persistence length, driving force, and bead mutual exclusion. The lack of excluded volume interactions is responsible for a shrinkage of active rings when increasing driving force in the flexible limit, while the presence induces a moderate swelling of chains. The internal dynamics of flexible phantom active rings shows activity-enhanced diffusive behavior at large activity values while, in the case of self-avoiding active chains, it is characterized by active ballistic motion not depending on stiffness. The long-time dynamics of active rings is marked by rotational motion whose period scales as the inverse of the applied tangential force, irrespective of persistence length and beads' self-exclusion.

matematica applicata
2024 Articolo in rivista open access

On penalized reload cost path, walk, tour and maximum flow: hardness and approximation

A meticulous description of a real network with respect to its heterogeneous physical infrastructure and properties is necessary for network design assessment. Quantifying the costs of making these structures work together effectively, and taking into account any hidden charges they may incur, can lead to improve the quality of service and reduce mandatory maintenance requirements, and mitigate the cost associated with finding a valid solution. For these reasons, we devote our attention to a novel approach to produce a more complete representation of the overall costs on the reload cost net-work. This approach considers both the cost of reloading due to linking structures and their internal charges, which we refer to as the penalized reload cost. We investigate the complexity and approximability of finding an optimal path, walk, tour, and maxi-mum flow problems under penalized reload cost. All these problems turn out to be NP-complete. We prove that, unless P=NP, even if the reload cost matrix is symmetric and satisfies the triangle inequality, the problem of finding a path, tour, and a maxi-mum flow with a minimum penalized reload cost cannot be approximated within any constant alpha < 2 , and finding a walk is not approximable within any factor beta <= 3.

Reload costApproximabilityNP-completenessPenalized reload costNetwork design
2024 Articolo in rivista open access

SOME CONSIDERATIONS ON NUMERICAL METHODS FOR CAUCHY SINGULAR INTEGRAL EQUATIONS ON THE REAL LINE

Capobianco, Maria Rosaria ; Criscuolo, Giuliana

Two different direct methods are proposed to solve Cauchy singular integral equations on the real line. The aforementioned methods differ in order to be able to prove their convergence which depends on the smoothness of the known term function in the integral equation.

Hilbert transform, singular integral equation, Hermite weight