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2023 Contributo in volume (Capitolo o Saggio) restricted access

A Multi-Scale Immune System Simulator for the Onset of Type 2 Diabetes

Type 2 diabetes mellitus (T2D), the most common form of diabetes, is a chronic metabolic disorder characterized by hyperglycemia, insulin resistance, and insulin deficiency. Although genetic predisposition determines in part the susceptibility to T2D, an unhealthy diet and a sedentary lifestyle are commonly recognised as essential drivers for the onset of the disease. Indeed, considerable evidence suggests that regular exercise and appropriate nutrition bring undeniable health benefits by reducing the risk of developing T2D or delaying its onset. The literature dealing with mathematical modelling for diabetes is abundant and in the view of a growing more personalized medicine the benefits of having tools to represent different virtual patient populations are clear. In this study, we describe a multi-scale computational model of the human metabolic and inflammatory status that is determined by individual dietary and activity habits. It includes a description of the immune activation and inflammation, a model for the food intake, stomach emptying and gut absorption of all three macronutrients (proteins, carbohydrates, fats), a component to account for the effects of physical activity on the hormones' regulation and the inflammatory state of the individual, and finally, a characterization of energy intake-expenditure balance. All these pieces are merged into a single integrated simulation tool to provide a helpful aid that can be used proactively to prevent the onset of the disease. Moreover, this model turns out to help design virtual cohorts of patients to conduct in silico studies.

Type 2 diabetes agent-based model ordinary differential equation personalised medicine computational model
2023 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) restricted access

A Fast Retrieval Model for Synergistic Inversion of Nadir / Zenith Spectral Radiance Measurements

Starting from 2019, the Italian Space Agency (ASI) is supporting dedicated projects for the development of new methods, tools and competences for the interpretation and the exploitation of the future measurements of the FORUM (Far-infrared Outgoing Radiation Understanding and Monitoring) experiment. FORUM will be the ninth Earth Explorer mission of the European Space Agency, scheduled for launch on a polar orbiting satellite in 2027. The core instrument of the mission will be a Fourier Transform Spectrometer with spectral range extending down to the Far-InfraRed (FIR), from 100 to 1600 cm-1 (from 100 to 6.25 microns in wavelength), thus covering the whole Earth's outgoing longwave radiation spectrum. FORUM will fly in loose formation with the MetOp-SG-A satellite, hosting the Infrared Atmospheric Sounding Interferometer - New Generation (IASI-NG). The Middle-InfraRed (MIR) range (645 to 2760 cm-1) of the upwelling atmospheric spectrum measured by IASI-NG will effectively complement the FORUM measurement. All together, the two missions will provide matching spectral radiance measurements with unprecedented coverage, from 100 to 2760 cm-1. While the FIR part of the spectrum (100-667 cm-1) measured by FORUM is the most sensitive to the water vapour content in the UTLS and to ice cloud properties, the atmospheric windows in the MIR are measured by IASI-NG with a very high signal-to-noise ratio, thus supplying very precise information on the surface temperature and on the temperature profile, which are essential to constrain the retrieval of the other geophysical parameters. To get ready for the exploitation of the synergistic FORUM and IASI-NG measurements, in the frame of the mentioned ASI projects a Bayesian retrieval algorithm with the capability to perform the simultaneous inversion of two different synergistic spectral radiance measurements was developed. The tool is named FAst Retrieval Model (FARM) as it is based on a fast monochromatic and parametrized radiative transfer model (?-IASI) which is also being further extended and refined within the same projects. FARM includes the capability to retrieve simultaneously both atmospheric and cloud parameters. Furthermore, the code can handle both air/space- borne nadir measurements and ground- based zenith measurements. In this work, we introduce the functionalities of the developed algorithm and present the results of the self-consistency and verification tests. The preliminary results of the inversion of some existing real measurements are also discussed.

sinergystic retrieval cloud parameter retrieval remote sensing
2023 Articolo in rivista open access

Efficient GPU parallelization of adaptive mesh refinement technique for high-order compressible solver with immersed boundary

Stefano Zaghi ; Francesco Salvadore ; Andrea Di Mascio ; Giacomo Ross

A new, highly parallelized, adaptive mesh refinement (AMR) library, equipped with an accurate immersed boundary (IB) method for solving the compressible Navier-Stokes system is presented. The library, named ADAM, is designed to efficiently exploit modern exascale GPU-accelerated supercomputers and it is implemented with a highly modular structure in order to make easy to leverage it for a wide range of CFD applications. The structured Cartesian grids at the basis of (octree) AMR approach allows to implement very high order accurate models retaining a low computational cost and high level of parallelization. The accurate IB method coupled with efficient AMR technique enables the simulation flows with complex (possibly moving and deforming) geometries. The library is applied to the simulation of a strong shock diffraction over a solid sphere and a detailed discussion concerning the physical results and the parallel performance obtained is presented.

Adaptive mesh refinement Immersed Boundary CFD HPC WENO GPU
2023 Articolo in rivista restricted access

Penalized wavelet nonparametric univariate logistic regression for irregular spaced data

Amato Umberto ; Antoniadis Anestis ; De Feis Italia ; Gijbels Irène

This paper concerns the study of a non-smooth logistic regression function. The focus is on a high-dimensional binary response case by penalizing the decomposition of the unknown logit regression function on a wavelet basis of functions evaluated on the sampling design. Sample sizes are arbitrary (not necessarily dyadic) and we consider general designs. We study separable wavelet estimators, exploiting sparsity of wavelet decompositions for signals belonging to homogeneous Besov spaces, and using efficient iterative proximal gradient descent algorithms. We also discuss a level by level block wavelet penalization technique, leading to a type of regularization in multiple logistic regression with grouped predictors. Theoretical and numerical properties of the proposed estimators are investigated. A simulation study examines the empirical performance of the proposed procedures, and real data applications demonstrate their effectiveness.

Nonparametric binary regression penalized log-likelihood proximal algorithms thresholding wavelets
2023 Contributo in Atti di convegno restricted access

Innovative remote-sensed thermodynamical indices to identify vegetation stress and surface dryness: application to southern Italy over the last decade

Pamela Pasquariello ; Guido Masiello ; Carmine Serio ; Pietro Mastro ; Giuliano Liuzzi ; Fabio Della Rocca ; Italia De Feis

Surface and vegetation monitoring is a key activity in analyzing and understanding how climate change is impacting natural resources. Moreover, identifying vegetation stress using remote-sensed data has proven to be essential in assessing said understanding, as well as in the effort to prevent or act upon extreme phenomena, such as premature land and forest dryness due to summer heatwaves in the Mediterranean area. Typically used satellite indices for this purpose are the well-known NDVI, followed by Leaf Area Index (LAI) and Surface Soil Moisture (ssm), together with physical parameters such as surface and air temperature close to the surface (the latter retrieved by both remote-sensed data and in situ measurements). However, it is a known fact that NDVI is not able to differentiate between barren soil and suffering vegetation, while surface temperature and air temperature correlate poorly with soil moisture. The analysis carried out in this paper is aimed at proving the effectiveness of two newly designed thermodynamical indices, ECI and wdi, in assessing vegetation stress and woodland degradation in southern Italy between 2014 and 2022. ECI is based on infrared surface emissivity, which is closely related to land cover, while wdi directly measures surface water loss. Said indices have been estimated from both ECMWF operational analysis and IASI L2 data, the latter upscaled and remapped on a regular grid using an optimal interpolation scheme. Moreover, a comparison with other traditional indices is presented, further validating the applied methodology.

climate change surface dryness water deficit index emissivity contrast index infrared observations remote sensing surface temperature dew point temperature
2023 Contributo in Atti di convegno restricted access

Comparison of the IASI water deficit index and other vegetation indices: the case study of the intense 2022 drought over the Po Valley

Fabio Della Rocca ; Italia De Feis ; Guido Masiello ; Pamela Pasquariello ; Carmine Serio

Exploiting the Infrared Atmospheric Sounder Interferometer (IASI) profiling capability for surface parameters, atmospheric temperature, and water vapour we have designed a new Water Deficit Index (wdi) to monitor drought and heatwaves. Because of climate change at a global level, drought is becoming a strong emergency also in countries which never experienced it, such as the Mediterranean mid-latitude area and, in particular, Italy. The last two years strongly affected the northern part of Italy, i.e. the Po Valley, causing high vegetation and soil water stress. Satellite data can provide a large spatial coverage (locally and globally) as well as a continuous data supply and are an important help to ground monitoring stations, especially in remote regions with dense vegetation. In this paper, we used the wdi to investigate the 2022 intense drought over the Po Valley region. We integrated the study considering both the Surface Soil Moisture (SSM) from Copernicus Sentinel-1 C-SAR and the Normalized Difference Moisture Index (NDMI) from Sentinel-2 images. We also considered the Fractional Vegetation Cover (FVC), the Fraction of Absorbed Photosynthetically Active Radiation (FAPAR) and the Leaf Area Index (LAI) data from the Drought & Vegetation Data Cube (D&V Data Cube) from the European Organization for the Exploitation of Meteorological Satellites - Satellite Application Facilities (EUMETSAT SAFs). Overall, we found that the wdi compares well to other indices related to vegetation stress and can be used as a tool for risk assessment of forest fires and agriculture productivity.

Infrared radiative transfer Vegetation and soil water stress Drought IASI Surface Temperature Dew point temperature SSM NDMI
2023 Poster in Atti di convegno metadata only access

Role of diagnostic tests in the decision to perform the oral food challenge test

Pignataro E ; Brindisi G ; Oliviero F ; Mondì F ; Martinelli I ; De Canditiis D ; Cinicola B ; Capponi M ; Gori A ; Zicari AM ; De Castro G ; De Castro M ; Anania C

Background: The oral food challenge test (OFC) represents the gold standard for the diagnosis of food allergy (FA). It is also necessary for the safe reintroduction of the allergen into the diet of the patient. However, it is burdened with serious side effects. We aimed to determine the role of Skin Prick Tests (SPT) and of component resolved diagnosis (CRD) in the decision to perform OFC in patients aged between 0 and 18 years with FA towards tree nuts, peanuts and seeds. Material and Methods: We enrolled 22 patients (mean age of 10.91±4.22 years; 12 males) with a diagnosis of FA towards nuts, peanuts and seeds. A total of 29 OFCs were performed (6 of these patients were tested for more than one allergen at different times) with the following allergens: peanut, hazelnut, walnut, almond, pistachio and sesame. For each patient, were performed SPT and IgE levels through CRDs towards the culprit allergens (ImmunoCAP). In particular, for the first two variables we considered the diameter of the wheels for the allergen tested for OFC (Prick-OFC) and the mean diameter of the wheals for the other untested allergens (Prick-non OFC). For the other two variables, we focused on the IgE towards the CRDs characterizing the allergens of which they were diagnosed and tested at the OFC (CRD-OFC) and the two most cross-reactive CRDs with the first chosen CRD (CRD-cross). We conducted an inferential statistical analysis with the aim of answering the question: is it possible to predict OFC outcome using the values of the four covariates CRD- OFC, CRD-cross, Prick-OFC and Prick-non OFC? The discriminative power of each of the four covariates was first analyzed independently of the others, by performing a T-test on the two groups for each of them (Y=1, OFC positive result and Y=0, OFC negative result), figure 1. Results: The most indicative variables of a possible positive reaction to OFC are the values of the CRD-cross (p =0.01957) and of the Prick-OFC (p=0.046936), while the prick-non OFC (p=0.30857) and CRD-OFC(P=0.24193) variables do not seem to have discriminatory power. Multivariate logistic regression analysis indicates that none of the four variables considered is statistically predictive of test result. Conclusions: These results are unable to quantify the likelihood that a patient will have a positive OFC based on their SPT and IgE assays. However, we can qualitatively say what to expect by considering its CRD-cross and Prick-OFC values rather than those of CRD-OFC and Prick-non OFC.

data analysis allergology clinical trial
2023 Articolo in rivista open access

Exploiting the Abstract Calculus Pattern for the Integration of Ordinary Differential Equations for Dynamics Systems: An Object-Oriented Programming Approach in Modern Fortran

Stefano Zaghi ; Cristiano Andolfi

This manuscript relates to the exploiting of the abstract calculus pattern (ACP) for the (numerical) solution of ordinary differential equation (ODEs) systems, which are ubiquitous mathematical formulations of many physical (dynamical) phenomena. We present FOODIE, a software suite aimed to numerically solve ODE problems by means of a clear, concise, and efficient abstract interface. The results presented prove manifold findings, in particular that our ACP approach enables ease of code development, clearness and robustness, maximization of code re-usability, and conciseness comparable with computer algebra system (CAS) programming (interpreted) but with the computational performance of compiled programming. The proposed programming model is also proven to be agnostic with respect to the parallel paradigm of the computational architecture: the results show that FOODIE applications have good speedup with both shared (OpenMP) and distributed (MPI, CAF) memory architectures. The present paper is the first announcement of the FOODIE project: the current implementation is extensively discussed, and its capabilities are proved by means of tests and examples.

ordinary differential equations partial differential equations object oriented programming abstract calculus pattern modern fortran
2023 Articolo in rivista open access

A technical characterization of APTs by leveraging public resources

Gonzaez-Manzano, Lorena ; de Fuentes, Josè M. ; Lombardi, Flavio ; Ramos, Cristina

Advanced persistent threats (APTs) have rocketed over the last years. Unfortunately, their technical characterization is incomplete--it is still unclear if they are advanced usages of regular malware or a different form of malware. This is key to develop an effective cyberdefense. To address this issue, in this paper we analyze the techniques and tactics at stake for both regular and APT-linked malware. To enable reproducibility, our approach leverages only publicly available datasets and analysis tools. Our study involves 11,651 regular malware and 4686 APT-linked ones. Results show that both sets are not only statistically different, but can be automatically classified with F1 > 0.8 in most cases. Indeed, 8 tactics reach F1 > 0.9. Beyond the differences in techniques and tactics, our analysis shows thats actors behind APTs exhibit higher technical competence than those from non-APT malwares.

Advanced persistent threat; APTs; Malware; MITRE ATT and CK
2023 Articolo in rivista open access

Segment Routing v6 - Security Issues and Experimental Results

David Lo Bascio ; Flavio Lombardi

SRv6 can provide hybrid cooperation between a centralized network controller and network nodes. IPv6 routers maintainmulti-hop ECMP-aware segments, whereas the controller establishes a source-routed path through the network. Since thestate of the flow is defined at the ingress to the network and then is contained in a specific packet header, called SegmentRouting Header (SRH), the importance of such a header itself is vital. Motivated by the need to study and investigate thistechnology, this paper discusses some security-related issues of Segment Routing. A SRv6 capable experimental testbed is built and detailed. Finally, an experimental test campaign is performed and results are evaluated and discussed.

Segment Routing Networking Security
2023 Articolo in rivista metadata only access

From COVID-19 vaccine candidates to compulsory vaccination: The attitudes of Italian citizens in the key 7-month of vaccination campaign

IntroductionThe aim of the study is to understand the evolution of COVID-19 vaccine acceptance over the key 7-month vaccine campaign in Italy, a period in which the country moved from candidate vaccines to products administered to the public. The research focus points to evaluate COVID-19 vaccine attitudes in adults and their children, propension towards compulsory vaccination, past and present adherence to anti-flu and anti-pneumococcal vaccines, and the reasons for trust/mistrust of vaccines.MethodsItalian residents aged 16->65 years were invited to complete an online survey from September 2020 to April 2021. The survey contained 13 questions: 3 on demographic data; 8 on vaccine attitudes; and 2 open-ended questions about the reasons of vaccine confidence/refusal. A preliminary word frequency analysis has been conducted, as well as a statistical bivariate analysis.ResultsOf 21.537 participants, the confidence of those in favor of the COVID-19 vaccine increases of 50 % and the number of people who wanted more information decreases by two-third. Willingness to vaccinate their children against COVID-19 also increased from 51 % to 66.5 %. Only one-third of the strong vaccine-hesitant participants, i.e. 10 %, remained hostile. Compulsory vaccination showed a large and increasing favor by participants up to 78 %, in a way similar to their propensity for children's mandatory vaccination (70.6 %). Respondents' past and present adherence to anti-flu and anti-pneumococcal vaccines does not predict their intentions to vaccinate against COVID-19. Finally, a semantic analysis of the reasons of acceptance/refusal of COVID-19 vaccination suggests a complex decision-making process revealed by the participants' use of common words in pro-and-cons arguments.ConclusionThe heterogeneity in the COVID-19 vaccine hesitancy, determinants and opinions detected at different ages, genders and pandemic phases suggests that health authorities should avoid one-size-fits-all vaccination campaigns. The results emphasize the long-term importance of reinforcing vaccine information, communication and education needs.

Vaccine Hesitancy Compulsory Vaccination COVID-19 SARS-CoV-2 pandemic Gender Bias
2023 Articolo in rivista restricted access

Reflection of internal gravity waves in the form of quasi-axisymmetric beams

Roberta Bianchini ; Thierry Paul

Preservation of the angle of reflection when an internal gravity wave hits a sloping boundary generates a focusing mechanism if the angle between the direction of propagation of the incident wave and the horizontal is close to the slope inclination (near-critical reflection). This paper provides an explicit description of the leading approximation of the unique Leray solution to the near-critical reflection of internal waves from a slope in the form of a beam wave. More precisely, our beam wave approach allows to construct a fully consistent and Lyapunov stable approximate solution, L2-close to the Leray solution, in the form of a beam wave, within a certain (nonlinear) time-scale. To the best of our knowledge, this is the first result where a mathematical study of internal waves in terms of spatially localized beam waves is performed.A beam wave is a linear superposition of rapidly oscillating plane waves, where the high frequency of oscillation is proportional to the inverse of a power of the small parameter measuring the weak amplitude of waves.Being localized in the physical space thanks to rapid oscilla- tions (and high variations of the modulus of the wavenumber), beams are physically more relevant than plane waves/packets of waves, whose wavenumber is nearly fixed (microlocalized). At the mathematical level, this marks a strong difference between the previous plane waves/packets of waves analysis and our approach.The main novelty of this work is to exploit the spatial localization of beam waves to exhibit a spatially localized, physically relevant solution and to improve the previous mathematical results from a twofold perspective: 1) our beam wave approximate solution is the sum of a finite number of terms, each of them is a consistent solution to the system and there is no artificial/non-physical corrector; 2) thanks to the absence of artificial correctors (used in the previous results) and to the special structure of the nonlinear term, we can push the expansion of our solution to next orders, so improving the accuracy and enlarging the consistency time-scale.Finally, our results provide a set of initial conditions localized on rays, for which the Leray solution maintains approximately in L2 the same localization.

Boussinesq equations, Internal gravity waves, Oblique reflection, Beams
2023 Contributo in volume (Capitolo o Saggio) open access

Symmetrization and asymptotic stability in non-homogeneous fluids around stratified shear flows

Roberta Bianchini ; Michele Coti Zelati ; Michele Dolce

proceeding del seminario Laurent Schwartz Roberta Bianchini ha tenuta all'Ecole Polytechinque (Parigi) a novembre 2022

Boussinesq equations shear flows stability
2023 Articolo in rivista open access

Advanced network connectivity features and zonal requirements in Covering Location problems

Real-world facility planning problems often require to tackle simultaneously network connectivity and zonal requirements, in order to guarantee an equitable provision of services and an efficient flow of goods, people and information among the facilities. Nonetheless, such challenges have not been addressed jointly so far. In this paper we explore the introduction of advanced network connectivity features and spatial-related requirements within Covering Location Problems. We adopt a broad modelling perspective, accounting for structural and economic aspects of connectivity features, while allowing the choice for one or more facilities to serve the facility networks as depots, and containing the maximal distance between any active facility and such depot(s). A novel class of Multi-objective Covering Location problems are proposed, utilising Mixed Integer Linear Programming as a modelling tool. Aiming at obtaining efficiently the arising Pareto Sets and providing actionable decision-making support throughout real planning processes, we adapt to our problem the robust variant of the AUGMEnted ?-CONstraint method (AUGMECON-R). Furthermore, we exploit the mathematical properties of the proposed problems to design tailored Matheuristic algorithms which boost the scalability of the solution method, with particular reference to the case of multiple depots. By conducting a comprehensive computational study on benchmark instances, we provide a thorough proof of concept for the novel problems, highlighting the challenging nature of the advanced connectivity features and the scalability of the proposed Matheuristics. From a managerial standpoint, the suitability of the proposed work in responding effectively to the motivating needs is showcased.

Augmented ɛ-constraint Covering Location Matheuristic Multi-objective Networks
2023 Articolo in rivista metadata only access

Controlling release from encapsulated drug-loaded devices: insights from modeling the dissolution front propagation

Ankur Jain ; David King ; Giuseppe Pontrelli ; Sean McGinty

Dissolution of drug from its solid form to a dissolved form is an important consideration in the design and optimization of drug delivery devices, particularly owing to the abundance of emerging compounds that are extremely poorly soluble. When the solid dosage form is encapsulated, for example by the porous walls of an implant, the impact of the encapsulant drug transport properties is a further confounding issue. In such a case, dissolution and diffusion work in tandem to control the release of drug. However, the interplay between these two competing processes in the context of drug delivery is not as well understood as it is for other mass transfer problems, particularly for practical controlled-release considerations such as an encapsulant layer around the drug delivery device. To address this gap, this work presents a mathematical model that describes controlled release from a drug-loaded device surrounded by a passive porous layer. A solution for the drug concentration distribution is derived using the method of eigenfunction expansion. The model is able to track the dissolution front propagation, and predict the drug release curve during the dissolution process. The utility of the model is demonstrated through comparison against experimental data representing drug release from a cylindrical drugloaded orthopedic fixation pin, where the model is shown to capture the data very well. Analysis presented here reveals how the various geometrical and physicochemical parameters influence drug dissolution and, ultimately, the drug release profile. It is found that the non-dimensional initial concentration plays a key role in determining whether the problem is diffusion-limited or dissolution-limited, whereas the nature of the problem is largely independent of other parameters including diffusion coefficient and encapsulant thickness. We expect the model will prove to be a useful tool for those designing encapsulated drug delivery devices, in terms of optimizing the design of the device to achieve a desired drug release profile.

dissolution diffusion drug delivery front propagation
2023 Abstract in Atti di convegno metadata only access

Modelling smart drug delivery with functionally graded materials

Diffusion drug delivery smart materials
2023 Altro metadata only access

Modellistica e calcolo di polimeri semiflessibili in campi esterni

Modellistica e calcolo di polimeri semiflessibili in campi esterni

matematica applicata
2023 Editoriale, Commentario, Contributo a Forum in rivista metadata only access

special Issue: Methods and Applications for Anomaly Detection

anomaly detection machine learning
2023 Articolo in rivista restricted access

A generalized mean-field game model for the dynamics of pedestrians with limited predictive abilities

Emiliano Cristiani ; Arianna de Santo ; Marta Menci

This paper investigates the model for pedestrian flow firstly proposed in [Cristiani, Priuli, and Tosin, SIAM J. Appl. Math., 75:605-629, 2015]. The model assumes that each individual in the crowd moves in a known domain, aiming at minimizing a given cost functional. Both the pedestrian dynamics and the cost functional itself depend on the position of the whole crowd. In addition, pedestrians are assumed to have predictive abilities, but limited in time.

pedestrian dynamics mean-field games Fokker-Planck equation Hamilton-Jacobi-Bellman equation evacuation problems
2023 Articolo in rivista open access

An all-densities pedestrian simulator based on a dynamic evaluation of the interpersonal distances

E. Cristiani ; M. Menci ; A. Malagnino ; G. G. Amaro

In this paper we deal with pedestrian modeling, aiming at simulating crowd behavior in normal and emergency scenarios, including highly congested mass events. We are specifically concerned with a new agent-based, continuous-in-space, discrete-in-time, nondifferential model, where pedestrians have finite size and are compressible to a certain extent. The model also takes into account the pushing behavior appearing at extremely high densities. The main novelty is that pedestrians are not assumed to generate any kind of "field" which governs the dynamics of the others in the space around them. Instead, the behavior of each pedestrian solely relies on its knowledge of the environment and the evaluation of interpersonal distances between it and the others. The model is able to reproduce the concave/concave fundamental diagram with a "double hump" (i.e. with a second peak) which shows up when body forces come into play. We present several numerical tests (some of them being inspired by the recent ISO 20414 standard), which show how the model can reproduce classical self-organizing patterns.

Pedestrians models Crowd models High densities Congestion Pushing behavior Optimal step models Velocity models