Measurement report: Investigation of optical properties of carbonaceous aerosols from the combustion of different fuels by an atmospheric simulation chamber
Danelli, S. G.
;
Caponi, L.
;
Brunoldi, M.
;
De Camillis, M.
;
Massab(\`o), D.
;
Mazzei, F.
;
Isolabella, T.
;
Pascarella, A.
;
Prati, P.
;
Santostefano, M.
;
Tarchino, F.
;
Vernocchi, V.
;
Brotto, P.
This study investigates the optical properties and variability of the mass absorption coefficient (MAC) of carbonaceous aerosols produced by the combustion of different fuels. Emissions were also characterized in terms of particle size distribution and concentrations of elemental carbon (EC) and organic carbon (OC). Experiments were conducted in an atmospheric simulation chamber with a soot generator fueled with propane and a commercial diesel engine running on regular diesel and hydrotreated vegetable oil (HVO). Different methods of sampling and analyzing carbonaceous aerosols were evaluated, focusing on workplace environments. The EC : TC (total carbon) ratios were found to be 0.7 ± 0.1 for propane, 0.15 ± 0.05 for diesel, and 0.4 ± 0.2 for HVO, indicating a higher proportion of OC in the diesel and HVO samples. Fresh soot particles showed monomodal log-normal distributions with peaks varying based on the fuel type and combustion process, with propane particles exhibiting a peak at larger particle sizes compared to HVO and diesel. The optical properties revealed that the MAC values varied across different fuel exhausts. Diesel combustion produced more light-absorbing particles compared to propane and HVO, with MAC values measured between 870 and 635 nm ranging from 6.2 ± 0.5 to 9.4 ± 0.4 m2g-1 for commercial diesel, 5.2 ± 0.5 to 7.8 ± 1.1 m2g-1 for propane, and 5.8 ± 0.2 to 8.4 ± 0.6 m2g-1 for HVO.
Meditation induces shifts in neural oscillations, brain complexity, and critical dynamics: novel insights from MEG
Pascarella A.
;
Tholke P.
;
Meunier D.
;
O'Byrne J.
;
Lajnef T.
;
Raffone A.
;
Guidotti R.
;
Pizzella V.
;
Marzetti L.
;
Jerbi K.
While the beneficial impacts of meditation are increasingly acknowledged, its underlying neural mechanisms remain poorly understood. We examined the electrophysiological brain signals of expert Buddhist monks during two established meditation methods known as Samatha and Vipassana, which employ focused attention and open-monitoring technique. By combining source-space magnetoencephalography with advanced signal processing and machine learning tools, we provide an unprecedented assessment of the role of brain oscillations, complexity, and criticality in meditation. In addition to power spectral density, we computed long-range temporal correlations (LRTC), deviation from criticality coefficient (DCC), Lempel-Ziv complexity, 1/f slope, Higuchi fractal dimension, and spectral entropy. Our findings indicate increased levels of neural signal complexity during both meditation practices compared to the resting state, alongside widespread reductions in gamma-band LRTC and 1/f slope. Importantly, the DCC analysis revealed a separation between Samatha and Vipassana, suggesting that their distinct phenomenological properties are mediated by specific computational characteristics of their dynamic states. Furthermore, in contrast to most previous reports, we observed a decrease in oscillatory gamma power during meditation, a divergence likely due to the correction of the power spectrum by the 1/f slope, which could reduce potential confounds from broadband 1/f activity. We discuss how these results advance our comprehension of the neural processes associated with focused attention and open-monitoring meditation practices.
Doing conferences differently: A decentralised multi-hub approach for ecological and social sustainability
Corneyllie A.
;
Walters T.
;
Dubarry A. -S.
;
He X.
;
Hinault T.
;
Kovic V.
;
Medani T.
;
Pascarella A.
;
Pinet S.
;
Ruzzoli M.
;
Schaworonkow N.
;
Soskic A.
;
Stekic K.
;
Tsilimparis K.
;
Ulloa J. L.
;
Wang R.
;
Chaumon M.
Conferences are invaluable for career progression, offering unique opportunities for networking, collaboration, and learning. However, there are challenges associated with the traditional in-person conference format. For example, there is a significant ecological impact from attendees’ travel behaviour, and there are social inequities in conference attendance, with historically marginalised groups commonly facing barriers to participation. Innovative practices that enable academic conferences to be ‘done differently’ are crucial for addressing these ecological and social sustainability challenges. However, while some such practices have emerged in recent years, largely due to the COVID-19 pandemic, little research has been done on their effectiveness. Our study addresses this gap using a mixed methods approach to analyse a real-world decentralised multi-hub conference held in 2023, comparing it to traditional in-person conference and fully online conference scenarios. The decentralised multi-hub format consists of local in-person hubs in different locations around the world, each with a unique local programme developed around a shared core global programme; there is no single centralised point of control. We calculated the CO2 emissions from transport for each scenario and found the decentralised multi-hub conference had significantly lower emissions than a traditional in-person conference, but higher emissions than a fully online conference. We also interviewed 14 local hub organisers and attendees to gain their perspectives about the ecological and social sustainability benefits of the decentralised multi-hub format. We found that the more accessible and inclusive format attracted a more diverse range of attendees, meaning that the benefits attributed to conference attendance were able to be shared more equitably. These findings demonstrate the ecological and social sustainability benefits of doing conferences differently, and can be used as further evidence in the argument to help transition conferences to a more desirable state in terms of ecological and social sustainability.
Magnetoencephalography (MEG) is a valuable non-invasive neurophysiology technique for investigation of
brain function and dysfunction. In this chapter, we will discuss the main characteristics of MEG signals, and
the great potential it offers for scientific interrogation in psychology, cognitive neuroscience, neurology,
and neuropsychiatry. Starting from the physical properties of MEG recordings, the chapter will highlight
the main advantages of utilizing MEG in neuroscience (that is a combination of very high temporal
resolution and good spatial resolution) and will summarize the current status of MEG in research and
clinical settings. To make this topic more relatable to widely available electroencephalography (EEG), we
will present several comparisons of MEG with EEG. The objective of the present chapter is to provide a
broad overview of the principle concepts and strengths of MEG, aimed at newcomers to the field.
MEG
Magnetencephalography
Electrophysiology
Source estimation
Brain Mapping
Magnetic Fields
EEGManyPipelines: A Large-scale, Grassroots Multi-analyst Study of Electroencephalography Analysis Practices in the Wild
Darinka Trübutschek
;
Yu-Fang Yang
;
Claudia Gianelli
;
Elena Cesnaite
;
Nastassja L. Fischer
;
Mikkel C. Vinding
;
Tom R. Marshall
;
Johannes Algermissen
;
Annalisa Pascarella
;
Tuomas Puoliväli
;
Andrea Vitale
;
Niko A. Busch
;
Gustav Nilsonne
The ongoing reproducibility crisis in psychology and cognitive neuroscience has sparked increasing calls to re-evaluate and reshape scientific culture and practices. Heeding those calls, we have recently launched the EEGManyPipelines project as a means to assess the robustness of EEG research in naturalistic conditions and experiment with an alternative model of conducting scientific research. One hundred sixty-eight analyst teams, encompassing 396 individual researchers from 37 countries, independently analyzed the same unpublished, representative EEG data set to test the same set of predefined hypotheses and then provided their analysis pipelines and reported outcomes. Here, we lay out how large-scale scientific projects can be set up in a grassroots, community-driven manner without a central organizing laboratory. We explain our recruitment strategy, our guidance for analysts, the eventual outputs of this project, and how it might have a lasting impact on the field.
The SESAMEEG package: a probabilistic tool for source localization and uncertainty quantification in M/EEG
Luria G.
;
Viani A.
;
Pascarella A.
;
Bornfleth H.
;
Sommariva S.
;
Sorrentino A.
Source localization from M/EEG data is a fundamental step in many analysis pipelines, including those aiming at clinical applications such as the pre-surgical evaluation in epilepsy. Among the many available source localization algorithms, SESAME (SEquential SemiAnalytic Montecarlo Estimator) is a Bayesian method that distinguishes itself for several good reasons: it is highly accurate in localizing focal sources with comparably little sensitivity to input parameters; it allows the quantification of the uncertainty of the reconstructed source(s); it accepts user-defined a priori high- and low-probability search regions in input; it can localize the generators of neural oscillations in the frequency domain. Both a Python and a MATLAB implementation of SESAME are available as open-source packages under the name of SESAMEEG and are well integrated with the main software packages used by the M/EEG community; moreover, the algorithm is part of the commercial software BESA Research (from version 7.0 onwards). While SESAMEEG is arguably simpler to use than other source modeling methods, it has a much richer output that deserves to be described thoroughly. In this article, after a gentle mathematical introduction to the algorithm, we provide a complete description of the available output and show several use cases on experimental M/EEG data.
Bayesian inference
EEG
inverse problems
MATLAB
MEG
open-source software
Python
Introduction: Connections among neurons form one of the most amazing and effective network in nature. At higher level, also the functional structures of the brain is organized as a network. It is therefore natural to use modern techniques of network analysis to describe the structures of networks in the brain. Many studies have been conducted in this area, showing that the structure of the neuronal network is complex, with a small-world topology, modularity and the presence of hubs. Other studies have been conducted to investigate the dynamical processes occurring in brain networks, analyzing local and large-scale network dynamics. Recently, network diffusion dynamics have been proposed as a model for the progression of brain degenerative diseases and for traumatic brain injuries. Methods: In this paper, the dynamics of network diffusion is re-examined and reaction-diffusion models on networks is introduced in order to better describe the degenerative dynamics in the brain. Results: Numerical simulations of the dynamics of injuries in the brain connectome are presented. Different choices of reaction term and initial condition provide very different phenomenologies, showing how network propagation models are highly flexible. Discussion: The uniqueness of this research lies in the fact that it is the first time that reaction-diffusion dynamics have been applied to the connectome to model the evolution of neurodegenerative diseases or traumatic brain injury. In addition, the generality of these models allows the introduction of non-constant diffusion and different reaction terms with non-constant parameters, allowing a more precise definition of the pathology to be studied.
Background: The investigation of mindfulness meditation practice, classically divided into focused attention meditation (FAM), and open monitoring meditation (OMM) styles, has seen a long tradition of theoretical, affective, neurophysiological and clinical studies. In particular, the high temporal resolution of magnetoencephalography (MEG) or electroencephalography (EEG) has been exploited to fill the gap between the personal experience of meditation practice and its neural correlates. Mounting evidence, in fact, shows that human brain activity is highly dynamic, transiting between different brain states (microstates). In this study, we aimed at exploring MEG microstates at source-level during FAM, OMM and in the resting state, as well as the complexity and criticality of dynamic transitions between microstates. Methods: Ten right-handed Theravada Buddhist monks with a meditative expertise of minimum 2,265 h participated in the experiment. MEG data were acquired during a randomized block design task (6 min FAM, 6 min OMM, with each meditative block preceded and followed by 3 min resting state). Source reconstruction was performed using eLORETA on individual cortical space, and then parcellated according to the Human Connect Project atlas. Microstate analysis was then applied to parcel level signals in order to derive microstate topographies and indices. In addition, from microstate sequences, the Hurst exponent and the Lempel-Ziv complexity (LZC) were computed. Results: Our results show that the coverage and occurrence of specific microstates are modulated either by being in a meditative state or by performing a specific meditation style. Hurst exponent values in both meditation conditions are reduced with respect to the value observed during rest, LZC shows significant differences between OMM, FAM, and REST, with a progressive increase from REST to FAM to OMM. Discussion: Importantly, we report changes in brain criticality indices during meditation and between meditation styles, in line with a state-like effect of meditation on cognitive performance. In line with previous reports, we suggest that the change in cognitive state experienced in meditation is paralleled by a shift with respect to critical points in brain dynamics.
Investigating the impact of the regularization parameter on EEG resting-state source reconstruction and functional connectivity using real and simulated data
Leone F.
;
Caporali A.
;
Pascarella A.
;
Perciballi C.
;
Maddaluno O.
;
Basti A.
;
Belardinelli P.
;
Marzetti L.
;
Di Lorenzo G.
;
Betti V.
: Accurate EEG source localization is crucial for mapping resting-state network dynamics and it plays a key role in estimating source-level functional connectivity. However, EEG source estimation techniques encounter numerous methodological challenges, with a key one being the selection of the regularization parameter in minimum norm estimation. This choice is particularly intricate because the optimal amount of regularization for EEG source estimation may not align with the requirements of EEG connectivity analysis, highlighting a nuanced trade-off. In this study, we employed a methodological approach to determine the optimal regularization coefficient that yields the most effective reconstruction outcomes across all simulations involving varying signal-to-noise ratios for synthetic EEG signals. To this aim, we considered three resting state networks: the Motor Network, the Visual Network, and the Dorsal Attention Network. The performance was assessed using three metrics, at different regularization parameters: the Region Localization Error, source extension, and source fragmentation. The results were validated using real functional connectivity data. We show that the best estimate of functional connectivity is obtained using 10-2, while 10-1 has to be preferred when source localization only is at target.
Introduction: The formation and functioning of neural networks hinge critically on the balance between structurally homologous areas in the hemispheres. This balance, reflecting their physiological relationship, is fundamental for learning processes. In our study, we explore this functional homology in the resting state, employing a complexity measure that accounts for the temporal patterns in neurodynamics. Methods: We used Normalized Compression Distance (NCD) to assess the similarity over time, neurodynamics, of the somatosensory areas associated with hand perception (S1). This assessment was conducted using magnetoencephalography (MEG) in conjunction with Functional Source Separation (FSS). Our primary hypothesis posited that neurodynamic similarity would be more pronounced within individual subjects than across different individuals. Additionally, we investigated whether this similarity is influenced by hemisphere or age at a population level. Results: Our findings validate the hypothesis, indicating that NCD is a robust tool for capturing balanced functional homology between hemispheric regions. Notably, we observed a higher degree of neurodynamic similarity in the population within the left hemisphere compared to the right. Also, we found that intra-subject functional homology displayed greater variability in older individuals than in younger ones. Discussion: Our approach could be instrumental in investigating chronic neurological conditions marked by imbalances in brain activity, such as depression, addiction, fatigue, and epilepsy. It holds potential for aiding in the development of new therapeutic strategies tailored to these complex conditions, though further research is needed to fully realize this potential.
functional source separation
neurodynamics
normalized compression distance
resting state
temporal course of the neuronal electrical activity
2024Contributo in volume (Capitolo o Saggio)metadata only access
MEG
Arcara G.
;
Pellegrino G.
;
Pascarella A.
;
Mantini D.
;
Kobayashi E.
;
Jerbi K.
Magnetoencephalography (MEG) is a valuable non-invasive neurophysiology technique for investigation of brain function and dysfunction. In this chapter, we will discuss the main characteristics of MEG signals, and the great potential it offers for scientific interrogation in psychology, cognitive neuroscience, neurology, and neuropsychiatry. Starting from the physical properties of MEG recordings, the chapter will highlight the main advantages of utilizing MEG in neuroscience (that is a combination of very high temporal resolution and good spatial resolution) and will summarize the current status of MEG in research and clinical settings. To make this topic more relatable to widely available electroencephalography (EEG), we will present several comparisons of MEG with EEG. The objective of the present chapter is to provide a broad overview of the principle concepts and strengths of MEG, aimed at newcomers to the field.
Brain Mapping
Electrophysiology
Magnetencephalography
Magnetic Fields
MEG
Source estimation
Electroencephalography (EEG) source imaging aims to reconstruct brain activity maps from the neuroelectric potential difference measured on the skull. To obtain the brain activity map, we need to solve an ill-posed and ill-conditioned inverse problem that requires regularization techniques to make the solution viable. When dealing with real-time applications, dimensionality reduction techniques can be used to reduce the computational load required to evaluate the numerical solution of the EEG inverse problem. To this end, in this paper we use the random dipole sampling method, in which a Monte Carlo technique is used to reduce the number of neural sources. This is equivalent to reducing the number of the unknowns in the inverse problem and can be seen as a first regularization step. Then, we solve the reduced EEG inverse problem with two popular inversion methods, the weighted Minimum Norm Estimate (wMNE) and the standardized LOw Resolution brain Electromagnetic TomogrAphy (sLORETA). The main result of this paper is the error estimates of the reconstructed activity map obtained with the randomized version of wMNE and sLORETA. Numerical experiments on synthetic EEG data demonstrate the effectiveness of the random dipole sampling method.
EEG imaging
inversion method
random sampling
sLORETA
underdetermined inverse problem
wMNE
The IAS-MEEG Package: A Flexible Inverse Source Reconstruction Platform for Reconstruction and Visualization of Brain Activity from M/EEG Data
Calvetti Daniela
;
Pascarella Annalisa
;
Pitolli Francesca
;
Somersalo Erkki
;
Vantaggi Barbara
We present a standalone Matlab software platform complete with visualization for the reconstruction of the neural activity in the brain from MEG or EEG data. The underlying inversion combines hierarchical Bayesian models and Krylov subspace iterative least squares solvers. The Bayesian framework of the underlying inversion algorithm allows to account for anatomical information and possible a priori belief about the focality of the reconstruction. The computational efficiency makes the software suitable for the reconstruction of lengthy time series on standard computing equipment. The algorithm requires minimal user provided input parameters, although the user can express the desired focality and accuracy of the solution. The code has been designed so as to favor the parallelization performed automatically by Matlab, according to the resources of the host computer. We demonstrate the flexibility of the platform by reconstructing activity patterns with supports of different sizes from MEG and EEG data. Moreover, we show that the software reconstructs well activity patches located either in the subcortical brain structures or on the cortex. The inverse solver and visualization modules can be used either individually or in combination. We also provide a version of the inverse solver that can be used within Brainstorm toolbox. All the software is available online by Github, including the Brainstorm plugin, with accompanying documentation and test data.
Background: Major Depressive Disorder (MDD) is a psychiatric illness that is often associated with potentially life -threatening physiological changes and increased risk for suicidal behavior. Electroencephalography (EEG) research suggests an association between depression and specific frequency imbalances in the frontal brain re-gion. Further, while recently developed technology has been proposed to simplify EEG data acquisition, more research is still needed to support its use in patients with MDD.Methods: Using the 14-channel EMOTIV EPOC cap, we recorded resting state EEG from 15 MDD patients with suicidal ideation (SI) vs. 12 healthy controls (HC) to investigate putative power spectral density (PSD) between -group differences at the F3 and F4 electrode sites. Specifically, we explored 1) between-group alpha power asymmetries (AA), 2) between-group differences in delta, theta, alpha and beta power, 3) correlations between PSD data and scores in the Beck's Depression Inventory-II (BDI-II), Beck's Anxiety Inventory (BAI), Reasons for Living Inventory (RFL), and Self-Disgust Questionnaire (SDS).Results: When compared to HC, patients had higher scores on the BAI (p = 0.0018), BDI-II (p = 0.0001) or SDS (p = 0.0142) scale and lower scores in the RFL (p = 0.0006) scale. The PSD analysis revealed no between-group difference or correlation with questionnaire scores for any of the measures considered.Conclusions: The present study could not confirm previous research suggesting frequency-specific anomalies in depressed persons with SI but might suggest that frontal EEG imbalances reflect greater anxiety and negative self -referencing. Future studies should confirm these findings in a larger population sample.
An in-vivo validation of ESI methods with focal sources
Pascarella Annalisa
;
Mikulan Ezequiel
;
Sciacchitano Federica
;
Sarasso Simone
;
Rubino Annalisa
;
Sartori Ivana
;
Cardinale Francesco
;
Zauli Flavia
;
Avanzini Pietro
;
Nobili Lino
;
Pigorini Andrea
;
Sorrentino Alberto
Electrophysiological source imaging (ESI) aims at reconstructing the precise origin of brain activity from measurements of the electric field on the scalp. Across laboratories/research centers/hospitals, ESI is performed with different methods, partly due to the ill-posedness of the underlying mathematical problem. However, it is difficult to find systematic comparisons involving a wide variety of methods. Further, existing comparisons rarely take into account the variability of the results with respect to the input parameters. Finally, comparisons are typically performed using either synthetic data, or in-vivo data where the ground-truth is only roughly known. We use an in-vivo high-density EEG dataset recorded during intracranial single pulse electrical stimulation, in which the true sources are substantially dipolar and their locations are precisely known. We compare ten different ESI methods, using their implementation in the MNE-Python package: MNE, dSPM, LORETA, sLORETA, eLORETA, LCMV beamformers, irMxNE, Gamma Map, SESAME and dipole fitting. We perform comparisons under multiple choices of input parameters, to assess the accuracy of the best reconstruction, as well as the impact of such parameters on the localization performance. Best reconstructions often fall within 1 cm from the true source, with most accurate methods hitting an average localization error of 1.2 cm and outperforming least accurate ones erring by 2.5 cm. As expected, dipolar and sparsity-promoting methods tend to outperform distributed methods. For several distributed methods, the best regularization parameter turned out to be the one in principle associated with low SNR, despite the high SNR of the available dataset. Depth weighting played no role for two out of the six methods implementing it. Sensitivity to input parameters varied widely between methods. While one would expect high variability being associated with low localization error at the best solution, this is not always the case, with some methods producing highly variable results and high localization error, and other methods producing stable results with low localization error. In particular, recent dipolar and sparsity-promoting methods provide significantly better results than older distributed methods. As we repeated the tests with "conventional" (32 channels) and dense (64, 128, 256 channels) EEG recordings, we observed little impact of the number of channels on localization accuracy; however, for distributed methods denser montages provide smaller spatial dispersion. Overall findings confirm that EEG is a reliable technique for localization of point sources and therefore reinforce the importance that ESI may have in the clinical context, especially when applied to identify the surgical target in potential candidates for epilepsy surgery.
Class imbalance should not throw you off balance: Choosing the right classifiers and performance metrics for brain decoding with imbalanced data
Thölke Philipp
;
MantillaRamos Yorguin Jose
;
Abdelhedi Hamza
;
Maschke Charlotte
;
Dehgan Arthur
;
Harel Yann
;
Kemtur Anirudha
;
Mekki Berrada Loubna
;
Sahraoui Myriam
;
Young Tammy
;
Bellemare Pépin Antoine
;
El Khantour Clara
;
Landry Mathieu
;
Pascarella Annalisa
;
Hadid Vanessa
;
Combrisson Etienne
;
O'Byrne Jordan
;
Jerbi Karim
Machine learning (ML) is increasingly used in cognitive, computational and clinical neuroscience. The reliable and efficient application of ML requires a sound understanding of its subtleties and limitations. Training ML models on datasets with imbalanced classes is a particularly common problem, and it can have severe consequences if not adequately addressed. With the neuroscience ML user in mind, this paper provides a didactic assessment of the class imbalance problem and illustrates its impact through systematic manipulation of data imbalance ratios in (i) simulated data and (ii) brain data recorded with electroencephalography (EEG), magnetoencephalography (MEG) and functional magnetic resonance imaging (fMRI). Our results illustrate how the widely-used Accuracy (Acc) metric, which measures the overall proportion of successful predictions, yields misleadingly high performances, as class imbalance increases. Because Acc weights the per-class ratios of correct predictions proportionally to class size, it largely disregards the performance on the minority class. A binary classification model that learns to systematically vote for the majority class will yield an artificially high decoding accuracy that directly reflects the imbalance between the two classes, rather than any genuine generalizable ability to discriminate between them. We show that other evaluation metrics such as the Area Under the Curve (AUC) of the Receiver Operating Characteristic (ROC), and the less common Balanced Accuracy (BAcc) metric - defined as the arithmetic mean between sensitivity and specificity, provide more reliable performance evaluations for imbalanced data. Our findings also highlight the robustness of Random Forest (RF), and the benefits of using stratified cross-validation and hyperprameter optimization to tackle data imbalance. Critically, for neuroscience ML applications that seek to minimize overall classification error, we recommend the routine use of BAcc, which in the specific case of balanced data is equivalent to using standard Acc, and readily extends to multi-class settings. Importantly, we present a list of recommendations for dealing with imbalanced data, as well as open-source code to allow the neuroscience community to replicate and extend our observations and explore alternative approaches to coping with imbalanced data.
Tuning Minimum-Norm regularization parameters for optimal MEG connectivity estimation
Vallarino Elisabetta
;
Hincapié Ana Sofia
;
Jerbi Karim
;
Leahy Richard M
;
Pascarella Annalisa
;
Sorrentino Alberto
;
Sommariva Sara
The accurate characterization of cortical functional connectivity from Magnetoencephalography (MEG) data remains a challenging problem due to the subjective nature of the analysis, which requires several decisions at each step of the analysis pipeline, such as the choice of a source estimation algorithm, a connectivity metric and a cortical parcellation, to name but a few. Recent studies have emphasized the importance of selecting the regularization parameter in minimum norm estimates with caution, as variations in its value can result in significant differences in connectivity estimates. In particular, the amount of regularization that is optimal for MEG source estimation can actually be suboptimal for coherence-based MEG connectivity analysis. In this study, we expand upon previous work by examining a broader range of commonly used connectivity metrics, including the imaginary part of coherence, corrected imaginary part of Phase Locking Value, and weighted Phase Lag Index, within a larger and more realistic simulation scenario. Our results show that the best estimate of connectivity is achieved using a regularization parameter that is 1 or 2 orders of magnitude smaller than the one that yields the best source estimation. This remarkable difference may imply that previous work assessing source-space connectivity using minimum-norm may have benefited from using less regularization, as this may have helped reduce false positives. Importantly, we provide the code for MEG data simulation and analysis, offering the research community a valuable open source tool for informed selections of the regularization parameter when using minimum-norm for source space connectivity analyses.
Functional connectivity
MEG
Minimum norm estimate
Regularization parameter
Surrogate data
The impact of ROI extraction method for MEG connectivity estimation: Practical recommendations for the study of resting state data.
Brkic Diandra
;
Sommariva Sara
;
Schuler Anna Lisa
;
Pascarella Annalisa
;
Belardinelli Paolo
;
Isabella Silvia L
;
Pino Giovanni Di
;
Zago Sara
;
Ferrazzi Giulio
;
Rasero Javier
;
Arcara Giorgio
;
Marinazzo Daniele
;
Pellegrino Giovanni
Magnetoencephalography and electroencephalography (M/EEG) seed-based connectivity analysis typically requires regions of interest (ROI)-based extraction of measures. M/EEG ROI-derived source activity can be treated in different ways. For instance, it is possible to average each ROI's time series prior to calculating connectivity measures. Alternatively one can compute connectivity maps for each element of the ROI, prior to dimensionality reduction to obtain a single map. The impact of these different strategies on connectivity estimation is still unclear. Here, we address this question within a large MEG resting state cohort (N=113) and simulated data. We consider 68 ROIs (Desikan-Kiliany atlas), two measures of connectivity (phase locking value-PLV, and its imaginary counterpart- ciPLV), and three frequency bands (theta 4-8 Hz, alpha 9-12 Hz, beta 15-30 Hz). We consider four extraction methods: (i) mean, or (ii) PCA of the activity within the ROI before computing connectivity, (iii) average, or (iv) maximum connectivity after computing connectivity for each element of the seed. Connectivity outputs from these extraction strategies are then compared with hierarchical clustering, followed by direct contrasts across extraction methods. Finally, the results are validated by using a set of realistic simulations. We show that ROI-based connectivity maps vary remarkably across strategies in both connectivity magnitude and spatial distribution. Dimensionality reduction procedures conducted after computing connectivity are more similar to each-other, while PCA before approach is the most dissimilar to other approaches. Although differences across methods are consistent across frequency bands, they are influenced by the connectivity metric and ROI size. Greater differences were observed for ciPLV than PLV, and in larger ROIs. Realistic simulations confirmed that after aggregation procedures are generally more accurate but have lower specificity (higher rate of false positive connections). Although computationally demanding, after dimensionality reduction strategies should be preferred when higher sensitivity is desired. Given the remarkable differences across aggregation procedures, caution is warranted in comparing results across studies applying different extraction methods.
The aim of this work was to characterize the palette and painting technique used for the realization of three late sixteenth century paintings from "Galleria dell'Accademia Nazionale di San Luca" in Rome attributed to Cavalier d'Arpino (Giuseppe Cesari), namely "Cattura di Cristo" (Inv. 158), "Autoritratto" (Inv. 546) and "Perseo e Andromeda" (Inv. 221). This study presents a diagnostic campaign that was carried out with non-invasive and portable techniques such as Energy Dispersive X-ray Fluorescence (ED-XRF) spectrometry, Fiber Optics Reflectance Spectroscopy (FORS) and Multispectral (MS) Imaging. This work was part of a project founded by Regione Lazio and MUR ("IMAGO - Multispectral Imaging for Art, Gamification and hOlografic reality" project). FORS and ED-XRF analyses allowed the preliminary characterization of the pictorial materials in a reliable non-invasive way. In particular, it was possible to identify most of the pigments used for the production of the paintings attributed to Cavalier d'Arpino. The MS images were acquired between the ultraviolet and the near-infrared regions of the electromagnetic spectrum (UV-Vis-NIR) by using different illumination sources and a cooled CCD camera equipped with interferential filters. It was possible to observe significant differences between the visible and the NIR images with some details of the paintings which resulted transparent in the infrared region. Furthermore, MS images were investigated in-depth by the application of data clustering algorithms to obtain semantic segmentation. This methodology exploits the information reported in MS images to generate a pixel classification based on statistical methods together with image analysis techniques. The result provides both an extrapolation of salient parts of the work as well as a better perception of some details. The combined results of this work allowed to investigate in-depth the production of one of the main painters from Italian mannerism.
Multispectral imaging
cultural heritage
spectroscopy
The IMAGO project aims to develop an innovative system that utilizes Multispectral Imaging and
Augmented Reality (AR) techniques for studying and preserving cultural heritage. By employing
machine learning algorithms on multispectral images, the system can detect lost original elements
and hidden features in cultural artifacts, offering a unique perspective beyond human vision.
Here we show some preliminary results related to the multi spectral analysis conducted on three
paintings attributed to Cavalier d'Arpino (Giuseppe Cesari) located at the Galleria dell'Accademia
Nazionale di San Luca in Rome. Non-invasive and portable techniques such as Energy Dispersive
X-ray Fluorescence (ED-XRF) spectrometry, Fiber Optics Reflectance Spectroscopy (FORS), UV
fluorescence imaging, and Multispectral (MS) imaging were employed. Preliminary characterization
of the pictorial materials was achieved through FORS and ED-XRF analyses, allowing the identi-
fication of pigments used for the creation of the three paintings and highlighting similarities and
differences in the palette.
MS images, acquired between the ultraviolet and near-infrared regions (NIR), revealed significant
differences between visible and NIR images with some details of the paintings transparent in the
infrared region. Furthermore, data clustering algorithms were applied to the MS images, enabling
semantic segmentation and providing extrapolation of salient parts of the artwork and better per-
ception of details.
The combined results of this work contribute to the preservation and interpretation of cultural
heritage and are of paramount importance for the developing of the IMAGO system
multispectral imaging
cultural heritage
spectroscopy
clustering