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2015 Articolo in rivista metadata only access

Internal dynamics and activated processes in soft-glassy materials

Benzi R ; Sbragaglia M ; Scagliarini A ; Perlekar P ; Bernaschi M ; Succi S ; Toschi F

Plastic rearrangements play a crucial role in the characterization of soft-glassy materials, such as emulsions and foams. Based on numerical simulations of soft-glassy systems, we study the dynamics of plastic rearrangements at the hydrodynamic scales where thermal fluctuations can be neglected. Plastic rearrangements require an energy input, which can be either provided by external sources, or made available through time evolution in the coarsening dynamics, in which the total interfacial area decreases as a consequence of the slow evolution of the dispersed phase from smaller to large droplets/bubbles. We first demonstrate that our hydrodynamic model can quantitatively reproduce such coarsening dynamics. Then, considering periodically oscillating strains, we characterize the number of plastic rearrangements as a function of the external energy-supply, and show that they can be regarded as activated processes induced by a suitable "noise" effect. Here we use the word noise in a broad sense, referring to the internal non-equilibrium dynamics triggered by spatial random heterogeneities and coarsening. Finally, by exploring the interplay between the internal characteristic time-scale of the coarsening dynamics and the external time-scale associated with the imposed oscillating strain, we show that the system exhibits the phenomenon of stochastic resonance, thereby providing further credit to the mechanical activation scenario.

Internal dynamics and activated processes in soft-glassy materials
2015 Articolo in rivista metadata only access

Lattice boltzmann simulation of mixed convection heat transfer in a driven cavity with non-uniform heating of the bottom wall

Bettaibi S ; Sediki E ; Kuznik F ; Succi S

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finite difference method (FDM) heated Lid-driven cavity lattice Boltzmann method (LBM) mixed convection non-uniform heating wall
2015 Articolo in rivista metadata only access

Lattice Boltzmann Simulation of Mixed Convection Heat Transfer in a Driven Cavity with Non-uniform Heating of the Bottom Wall

Bettaibi Soufiene ; Sediki Ezeddine ; Kuznik Frederic ; Succi Sauro

The goal of this article is to study numerically the mixed convection in a differentially heated lid-driven cavity with non-uniform heating of the bottom wall. The velocity field is solved by a hybrid scheme with multiple relaxation time Lattice Boltzmann (MRT-LBM) model, while the temperature field is obtained by resolution of the energy balance equation using the finite difference method (FDM). First, the model is checked and validated using data from the literature. Validation of the present results with those available in the literature shows a good agreement. A good efficiency in time simulation is confirmed. Thereafter, the model has been applied to mixed convection in a driven cavity with non-uniform heating wall at the fixed Grashof number Gr = 10(6). It is found that, the heat transfer is weakened as the Richardson number is augmented. For Gr = 10(6), we note the appearance of secondary vortices at different positions of the cavity corners.

lattice Boltzmann method (LBM) finite difference method (FDM) heated Lid-driven cavity mixed convection non-uniform heating wall
2015 Articolo in rivista metadata only access

Rheological properties of sheared vesicle and cell suspensions

A Lamura ; G Gompper

Numerical simulations of vesicle suspensions are performed in two dimensions to study their dynamical and rheological properties. An hybrid method is adopted, which combines a mesoscopic approach for the solvent with a curvature-elasticity model for the membrane. Shear flow is induced by two counter-sliding parallel walls, which generate a linear flow profile. The flow behavior is studied for various vesicle concentrations and viscosity ratios between the internal and the external fluid. Both the intrinsic viscosity and the thickness of depletion layers near the walls are found to increase with increasing viscosity ratio.

Vesicles Rheology Shear flow Numerical modeling
2015 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Rheologic and dynamic behavior of sheared vesicle suspensions

A Lamura ; G Gompper

The rheology and dynamics of suspensions of fluid vesicles is investigated by a combination of molecular dynamics and mesoscale hydrodynamics simulations in two dimensions. The vesicle suspension is confined between two no-slip shearing walls. The flow behavior is studied as a function of the shear rate, the volume fraction of vesicles, and the viscosity ratio between inside and outside fluids. Results are obtained for the interactions of two vesicles, the intrinsic viscosity of the suspension, and the cell-free layer near the walls.

Vesicles rheology numerical methods
2015 Rapporto tecnico metadata only access

Cavitation inception of a van der Waals fluid at a sack-wall obstacle

G Kaehler ; F Bonelli ; G Gonnella ; A Lamura

Cavitation in a liquid moving past a constraint is numerically investigated by means of a free-energy lattice Boltzmann simulation based on the van der Waals equation of state. The fluid is streamed past an obstacle and, depending on the pressure drop between inlet and outlet, vapor formation underneath the corner of the sack-wall is observed. The circumstances of cavitation formation are investigated and it is found that the local bulk pressure and mean stress are insufficient to explain the phenomenon. Results obtained in this study strongly suggest that the viscous stress, interfacial contributions to the local pressure, and the Laplace pressure are relevant to the opening of a vapor cavity. This can be described by a generalization of Joseph's criterion that includes these contributions. A macroscopic investigation, closer in spirit to engineering practice, measuring mass flow rate behavior and discharge coefficient was also performed. Simulations were carried out by fixing the total upstream pressure and varying the static downstream pressure for different kinematic viscosities. As theoretically predicted, mass flow rate increases linearly with the square root of the pressure drop. However, when cavitation occurs the mass flow growth rate is reduced and eventually it collapses into a choked flow state. Reduction of the mass flow growth rate coincides with a smaller discharge coefficient. Therefore, in the cavitating regime, as theoretically predicted and experimentally verified, the discharge coefficient grows with the Nurick cavitation number. On the other hand, in the non-cavitating regime the discharge coefficient grows with the Reynolds number due to the reduction of the boundary layer thickness.

bubble dynamics cavitation multiphase flows
2015 Rapporto tecnico metadata only access

Single-bubble cavitation in quiescent and sheared liquids

T Biciusca ; V Sofonea ; G Gonnella ; A Lamura

The bubble cavitation problem in quiescent and sheared liquids is investigated using a third-order isothermal lattice Boltzmann (LB) model that describes a two-dimensional ($2D$) fluid obeying the van der Waals equation of state. The LB model has 16 off-lattice velocities and is based on the Gauss-Hermite quadrature method. The evolution equations for the distribution functions in this model are solved using the corner transport upwind numerical scheme on large square lattices (up to $4096 \times 4096$ nodes). In a quiescent liquid, the computer simulation results are in good agreement to the $2D$ Rayleigh-Plesset equation. In a sheared liquid, we investigated the evolution of the total bubble area, the bubble deformation and the bubble tilt angle, for various values of the shear rate. A linear relation between the dimensionless deformation coefficient $D$ and the capillary number $Ca$ is found at small $Ca$ but with a different factor than in equilibrium liquids. A non-linear regime is observed for $Ca \gtrsim 0.3$.

bubble dynamics numerical simulations cavitation
2015 Articolo in rivista restricted access

Kinetic effects and modelling of mRNA turnover

Broader comprehension of gene expression regulatory mechanisms can be gained from a global analysis of how transcription and degradation are coordinated to orchestrate complex cell responses. The role of messenger RNA (mRNA) turnover modulation in gene expression levels has become increasingly recognized. From such perspective, in this review we briefly illustrate how a simple but effective mathematical model of mRNA turnover and some experimental findings, may together shed light on the molecular mechanisms underpinning the major role of mRNA decay rates in shaping the kinetics of gene activation and repression

bioinformatics mRNA transcriptional regulation mathematical model ordinary differential equation
2015 Articolo in rivista metadata only access

The clinical significance of HCV core antigen detection during Telaprevir/Peg-Interferon/Ribavir in therapy in patients with HCV 1 genotype infection

Anna Rosa Garbuglia ; Raffaella Lionetti ; Daniele Lapa ; Chiara Taibi ; Ubaldo ViscoComandini ; Marzia Montalbano ; Gianpiero D'Offizi ; Filippo Castiglione ; Maria Rosaria Capobianchi ; Paola Paci

Background: Direct-acting antiviral drugs (DAA) regimen improve the SVR rate. However, adverse effects often lead to therapy interruption. This underlines the importance to find some predictive parameters of response in order to consider the possibility of a shorter time of antiviral treatment in the appearance of adverse effects without affecting the success of the therapy. Objectives: We aimed to examine the HCVAg kinetics in the early phase of treatment and its predictive value of SVR in patients undergoing TPV/Peg-IFN/RBV treatment. Study design: Twenty-three patients infected by HCV genotype 1 (1a n = 11; 1b n = 12) were included in this prospective study. Results: At baseline the median Log of HCVAg concentration in RVR and EVR patients were 3.15 fmol/L and 3.45 fmol/L, respectively with no significant differences. The baseline median HCV-RNA to HCVAg ratio was 233.77, this ratio was significantly lower when measured on day 1 (27.52) and on day 6 (24.84) (p < 0.001). The two-tailed Fisher's exact test indicated that the SVR response is statistically significantly different in patients with detected HCVAg at week1 compared to patients with no detectable HCVAg (p = 0.05). The sensitivity, specificity, and negative and positive predictive values (NPV, PPV) were 53.8, 87.5, 53.8 and 87.5%, respectively. The area under the ROC curve was 0.71 at day T6, the best cut-off of 3 fmol/L when evaluated with the HCVAg plasma concentration at dayT6. Conclusion: Undetectable HCVAg in the early phase of TPV/Peg-IFN/RBV treatment could represent an important parameter for predicting SVR.

bioinformatics
2015 Articolo in rivista restricted access

Extinction dynamics of a discrete population in an oasis

Understanding the conditions ensuring the persistence of a population is an issue of primary importance in population biology. The first theoretical approach to the problem dates back to the 1950s with the Kierstead, Slobodkin, and Skellam (KiSS) model, namely a continuous reaction-diffusion equation for a population growing on a patch of finite size L surrounded by a deadly environment with infinite mortality, i.e., an oasis in a desert. The main outcome of the model is that only patches above a critical size allow for population persistence. Here we introduce an individual-based analog of the KiSS model to investigate the effects of discreteness and demographic stochasticity. In particular, we study the average time to extinction both above and below the critical patch size of the continuous model and investigate the quasistationary distribution of the number of individuals for patch sizes above the critical threshold.

Linear equations Quasi-stationary distribution
2015 Articolo in rivista metadata only access

Stability and Convergence of Solutions to Volterra Integral Equations on Time Scales

E Messina ; AVecchio

We consider Volterra integral equations on time scales and present our study about the long time behavior of their solutions. We provide sufficient conditions for the stability and investigate the convergence properties when the kernel of the equations vanishes at infinity.

Volterra equations Time Scales
2015 Articolo in rivista metadata only access

Prediction of energy losses in water impacts using incompressible and weakly compressible models

In the present work the simulation of water impacts is discussed. The investigation is mainly focused on the energy dissipation involved in liquid impacts in both the frameworks of the weakly compressible and incompressible models. A detailed analysis is performed using a weakly compressible Smoothed Particle Hydrodynamics (SPH) solver and the results are compared with the solutions computed by an incompressible mesh-based Level-Set Finite Volume Method (LS-FVM). Impacts are numerically studied using single-phase models through prototypical problems in 1D and 2D frameworks. These problems were selected for the conclusions to be of interest for, e.g., the numerical computation of the flow around plunging breaking waves. The conclusions drawn are useful not only to SPH or LS-FVM users but also for other numerical models, for which accurate results on benchmark test-cases are provided.

Energy loss Finite Volume Method Free-surface flow Level-Set Smoothed Particle Hydrodynamics Water impact
2015 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

New ESA MIPAS products

Piera Raspollini ; Ginette Aubertin ; Flavio Barbara ; Marc Bernau ; Bruno Carli ; Massimo Carlotti ; Elisa Castelli ; Simone Ceccherini ; Angelika Dehn ; Bianca Maria Dinelli ; Anu Dudhia ; JeanMarie Flaud ; Michael Kiefer ; Gaetan Perron ; Manuel LopezPuertas ; John Remedios ; Marco Ridolfi ; Luca Sgheri

MIPAS measurements on ENVISAT represent a unique database for the study of atmospheric composition and of the time variation of atmospheric constituents. For trend studies it is important that instrumental drifts are reduced. Some of the MIPAS spectral bands are affected by time-dependent non-linearity which have been recently corrected. In addition to this non-linearity correction, the forthcoming new version of MIPAS products (Version 7) contains several other improvements: a new approach for handling continuum capable of making the retrieval more stable, a new selection of spectral intervals selected for the analysis of the full resolution measurements aimed to reduce the bias between full resolution and optimized resolution measurements, the regularization of the H2O profiles, the products of five new species (HCFC-22, CFC-14, HCN, COF2, CCl4), which makes equal to 15 the total number of retrieved species. The latest improvements implemented in the ESA processor and some of the results on trend will be presented and discussed.

MIPAS Atmospheric Composition
2015 Abstract in Atti di convegno metadata only access

Stability of numerical approximations to Volterra integral equations

EMessina ; AVecchio
Volterra integral equations Numerical stability Boundedness
2015 Pubblicazione di fonti inedite metadata only access

Eugenio Elia Levi: le speranze perdute della matematica italiana

Eugenio Elia Levi è stato uno dei più grandi matematici italiani del '900 (come del resto il fratello Beppo). Morì nell'ottobre del 1917, ucciso da un cecchino, nelle fasi iniziali della disfatta di Caporetto. Attivo interventista, allo scoppio della prima guerra mondiale si era arruolato volontariamente nel Genio Zappatori e fu poi promosso capitano per meriti di guerra. Eugenio Elia Levi si era laureato in Matematica nel 1904, studiando alla "Normale" di Pisa dove ebbe come maestri Luigi Bianchi e Ulisse Dini. Nel 1909 ottenne la cattedra di Analisi infinitesimale presso l'Università di Genova. La sua produzione scientifica fu tanto profonda quanto differenziata - ha riguardato i gruppi di Lie, le equazioni alle derivate parziali e la teoria delle funzioni di più variabili complesse - e venne immediatamente apprezzata negli ambienti matematici internazionali. Benché fosse di soli due anni più anziano di Mauro Picone (fondatore dell'IAC), quest'ultimo lo considerò sempre come un suo grande maestro, alla pari di Luigi Bianchi e Ulisse Dini.

Storia della matematica prima guerra mondiale
2015 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) restricted access

New MIPAS V7 products

Piera Raspollini ; Ginette Aubertin ; F Barbara ; Marc Bernau ; Manfred Birk ; Bruno Carli ; Massimo Carlotti ; Elisa Castelli ; Simone Ceccherini ; Angelika Dehn ; Marta De Laurentis ; Bianca M Dinelli ; Anu Dudhia ; JeanMarie Flaud ; Michael Kiefer ; David Moore ; Gaetan Perron ; Manuel LopezPuertas ; John Remedios ; Marco Ridolfi ; Luca Sgheri ; Georg Wagner

MIPAS measurements on ENVISAT represent a unique database for the study of atmospheric composition and of the time variation of atmospheric constituents.For trend studies it is important that instrumental drifts are reduced. Some of the MIPAS spectral bands are affected by time-dependent non-linearity that have been recently corrected.In addition to this non-linearity correction, the forthcoming new version of MIPAS products (Version 7) contains several other improvements: a new approach for handling continuum leading to a more stable retrieval, a new selection of spectral intervals for the analysis of the full resolution measurements aiming to reduce the bias between full resolution and optimized resolution measurements, the regularization of the H2O profiles. Furthermore, the implementation of the retrieval of five new species (HCFC-22, CFC-14, HCN, COF2, CCl4) leads to a total of 15 species in ESA products.The latest improvements implemented in the ESA processor, the results of the validation of the products and some preliminary results on the trend of some ozone depleting substances will be presented and discussed.

MIPAS stratospheric trends
2015 Editoriale, Commentario, Contributo a Forum in rivista metadata only access

Preface: BITS2014, the Annual Meeting of the Italian Society of Bioinformatics

Facchiano A ; Angelini C ; Bosotti R ; Guffanti A ; Marabotti A ; Marangoni R ; Pascarella S ; Romano P ; Zanzoni A ; HelmerCitterich ; M
bioinformatics
2015 Articolo in rivista metadata only access

Continuity properties of solutions to the p-Laplace system

Angela Alberico ; Andrea Cianchi ; Carlo Sbordone

A sharp integrability condition on the right-hand side of the p-Laplace system for all its solutions to be continuous is exhibited. Their uniform continuity is also analyzed and estimates for their modulus of continuity are provided. The relevant estimates are shown to be optimal as the right-hand side ranges in classes of rearrangement-invariant spaces, such as Lebesgue, Lorentz, Lorentz-Zygmund, and Marcinkiewicz spaces, as well as some customary Orlicz spaces.

Nonlinear elliptic systems continuity of solutions modulus of continuity classical Lorentz spaces Orlicz spaces Sobolev embeddings.
2015 Altro metadata only access

A priori estimates for solutions to anisotropic elliptic problems via symmetrization

Angela Alberico ; Giuseppina di Blasio ; Filomena Feo

We obtain a comparison result for solutions to nonlinear fully anisotropic elliptic problems by means of anisotropic symmetrization. As consequence we deduce a priori estimates for norms of the relevant solutions.

Anisotropic symmetrization rearrangements A priori estimates Dirichlet problems.
2015 Contributo in volume (Capitolo o Saggio) metadata only access

Globally convergent hybridization of particle swarm optimization using line search-based derivative-free techniques

The hybrid use of exact and heuristic derivative-free methods for global unconstrained optimization problems is presented. Many real-world problems are modeled by computationally expensive functions, such as problems in simulationbased design of complex engineering systems. Objective-function values are often provided by systems of partial differential equations, solved by computationally expensive black-box tools. The objective-function is likely noisy and its derivatives are often not available. On the one hand, the use of exact optimization methods might be computationally too expensive, especially if asymptotic convergence properties are sought. On the other hand, heuristic methods do not guarantee the stationarity of their final solutions. Nevertheless, heuristic methods are usually able to provide an approximate solution at a reasonable computational cost, and have been widely applied to real-world simulation-based design optimization problems. Herein, an overall hybrid algorithm combining the appealing properties of both exact and heuristic methods is discussed, with focus on Particle Swarm Optimization (PSO) and line search-based derivative-free algorithms. The theoretical properties of the hybrid algorithm are detailed, in terms of limit points stationarity. Numerical results are presented for a specific test function and for two real-world optimization problems in ship hydrodynamics.

Derivative-free optimization Global optimization Hybrid optimization algorithm Line search algorithm Particle swarm optimization Ship design Simulationbased design