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2022 Articolo in rivista metadata only access

Mass diffusion in multi-layer systems: an electrical analogue modelling approach

Rochowski P ; Pontrelli G

We develop a lumped parameter model to describe and predict the mass release of (absorption from) an arbitrary shaped body of any dimension in a large environment. Through the one-to-one analogy between diffusion-dominated mass transfer systems and electrical circuits we provide exact solutions in terms of averaged concentrations and mass released. An estimate of the equivalent resistance and of the release time is also given, and shown to be inversely proportional to the diffusivity. The proposed electrical analogue approach allows a time constant to be defined and provides an easy extension to a multi-layer and multi-phase cases in planar and spherical geometries. The simulation results are compared with those obtained from the solution of the corresponding analytical, numerical and experimental solutions, showing a satisfactory accuracy and a good agreement.

drug release mathematical modelling lumped parameter model
2022 Articolo in rivista metadata only access

Dissolution of irregularly-shaped drug particles: mathematical modelling

Abrami M ; Grassi M ; Masiello D ; Pontrelli G

The prediction of drug dissolution profiles is crucial for elucidating the pharmacokinetic behaviour of drugs and the bioavailability of dosage forms. In this work, we develop a mathematical model to describe the dissolution process of irregularly shaped particles. We use a complete dissolution model that accounts for both surface kinetics and convective diffusion. The mechanistic relationship between the mass transfer coefficient and the local curvature is derived from the fundamental physical laws governing these processes. Our model theoretically shows that the dissolution rate depends nonlinearly on the surface curvature. The subsequent recrystallization process in the bulk fluid is also considered. The main result of this work is its simplicity, since only two coupled nonlinear ordinary differential equations are needed to describe the dissolution process. Another remarkable advantage is the possibility to determine the model parameters using common independent techniques, so that the importance of the wettability of solids on the dissolution process can be evaluated. Finally, the proposed model demonstrated the importance of particle shape in describing the experimental dissolution data of theophylline monohydrate.

drug release mathematical modelling numerical methods
2022 Articolo in rivista metadata only access

Characterization of the Shells in Layer-By-Layer Nanofunctionalized Particles: A Computational Study

Barchiesi E ; Wareing T ; Desmond L ; Phan AN ; Gentile P ; Pontrelli G

Drug delivery carriers are considered an encouraging approach for the localized treatment of disease with minimum effect on the surrounding tissue. Particularly, layer-by-layer releasing particles have gained increasing interest for their ability to develop multifunctional systems able to control the release of one or more therapeutical drugs and biomolecules. Although experimental methods can offer the opportunity to establish cause and effect relationships, the data collection can be excessively expensive or/and time-consuming. For a better understanding of the impact of different design conditions on the drug-kinetics and release profile, properly designed mathematical models can be greatly beneficial. In this work, we develop a continuum-scale mathematical model to evaluate the transport and release of a drug from a microparticle based on an inner core covered by a polymeric shell. The present mathematical model includes the dissolution and diffusion of the drug and accounts for a mechanism that takes into consideration the drug biomolecules entrapped into the polymeric shell. We test a sensitivity analysis to evaluate the influence of changing the model conditions on the total system behavior. To prove the effectiveness of this proposed model, we consider the specific application of antibacterial treatment and calibrate the model against the data of the release profile for an antibiotic drug, metronidazole. The results of the numerical simulation show that ~85% of the drug is released in 230 h, and its release is characterized by two regimes where the drug dissolves, diffuses, and travels the external shell layer at a shorter time, while the drug is released from the shell to the surrounding medium at a longer time. Within the sensitivity analysis, the outer layer diffusivity is more significant than the value of diffusivity in the core, and the increase of the dissolution parameters causes an initial burst release of the drug. Finally, changing the shape of the particle to an ellipse produces an increased percentage of drugs released with an unchanged release time.

Drug release mathematical modelling
2022 Articolo in rivista metadata only access

Theoretical modeling of endovascular drug delivery into a multilayer arterial wall from a drug-coated balloon

Jain A ; McGinty S ; Pontrelli G ; Zhou L

Drug-coated balloons (DCBs) are used commonly for delivering drug into diseased arteries. When applied on the inner surface of an artery, drug is transported from the balloon into the multilayer arterial wall through diffusion and advection, where it is ultimately absorbed through binding reactions. Mathematical modeling of these mass transport processes has the potential to help understand and optimize balloon-based drug delivery, thereby ensuring both safety and efficacy. The present work derives a closed-form solution for the multilayer cylindrical convection-diffusion-reaction (CDR) transport problem that occurs in balloon-based endovascular drug delivery. The model is presented for an arbitrary number of layers, and accounts for various transport processes in terms of relevant non-dimensional numbers. Quasi-orthogonality for this multilayer problem is derived. Closed-form expressions for the amounts of drug delivered by the balloon, bound in each arterial layer and lost from the external surfaces are derived. It is shown that only a small fraction of drug from the balloon is actually delivered into the artery during the short exposure time, which is influenced strongly by the diffusion coefficient of the inner-most layer. Further, binding of the drug is found to depend strongly on the reaction coefficient, expressed in terms of the Damköhler number. It is shown that boundary conditions on the inner and outer surfaces, expressed in terms of Sherwood numbers, play a role in drug uptake over a longer time period. The model is general enough to be applicable for a wide variety of scenarios and operational conditions, including an arbitrary number of layers. Results from this work provide fundamental insights into drug transport and uptake processes. In addition, these results may help improve the safety and efficacy of balloon-based drug delivery.

mathematical modelling drug release
2022 Contributo in volume (Capitolo o Saggio) metadata only access

Electromagnetic Hypogene Co-seismic Sources

We survey some mathematical models for electro-magnetic emission due to electro-mechanically generated sources in heterogeneous materials. Because of the applications in geophysics, we focus our attention on parabolic approxima- tions of Maxwell's equations; also, we estimate under various assumptions the discrepancy with respect to the complete set of classical electrodynamics. Then, we introduce a related inverse problem

eddy currents non-smooth coefficients initial-boundary value problem inverse problems
2022 Contributo in Atti di convegno restricted access

Toward Disease Diagnosis Visual Support Bridging Classic and Precision Medicine

Palleschi ; Alessia ; Petti ; Manuela ; Tieri ; Paolo ; Angelini ; Marco

The traditional approach in medicine starts with investigating patients' symptoms to make a diagnosis. While with the advent of precision medicine, a diagnosis results from several factors that interact and need to be analyzed together. This added complexity asks for increased support for medical personnel in analyzing these data altogether. Our objective is to merge the traditional approach with network medicine to offer a tool to investigate together symptoms, anatomies, diseases, and genes to establish a diagnosis from different points of view. This paper aims to help the clinician with the typical workflow of disease analysis, proposing a Visual Analytics tool to ease this task. A use case demonstrates the benefits of the proposed solution.

Disease Diagnosis Visual Support network medicine precision medicine
2022 Articolo in rivista open access

Numerical Study of a Confined Vesicle in Shear Flow at Finite Temperature

The dynamics and rheology of a vesicle confined in a channel under shear flow are studied at finite temperature. The effect of finite temperature on vesicle motion and system viscosity is investigated. A two-dimensional numerical model, which includes thermal fluctuations and is based on a combination of molecular dynamics and mesoscopic hydrodynamics, is used to perform a detailed analysis in a wide range of the Peclet numbers (the ratio of the shear rate to the rotational diffusion coefficient). The suspension viscosity is found to be a monotonous increasing function of the viscosity contrast (the ratio of the viscosity of the encapsulated fluid to that of the surrounding fluid) both in the tank-treading and the tumbling regime due to the interplay of different temperature-depending mechanisms. Thermal effects induce shape and inclination fluctuations of the vesicle which also experiences Brownian diffusion across the channel increasing the viscosity. These effects reduce when increasing the Peclet number.

matematica applicata
2022 Articolo in rivista open access

In-silico evaluation of adenoviral COVID-19 vaccination protocols: Assessment of immunological memory up to 6 months after the third dose

Background: The immune response to adenoviral COVID-19 vaccines is affected by the interval between doses. The optimal interval is unknown.Aim: We aim to explore in-silico the effect of the interval between vaccine administrations on immunogenicity and to analyze the contribution of pre-existing levels of antibodies, plasma cells, and memory B and T lymphocytes.Methods: We used a stochastic agent-based immune simulation platform to simulate two-dose and three-dose vaccination protocols with an adenoviral vaccine. We identified the model's parameters fitting anti-Spike antibody levels from individuals immunized with the COVID-19 vaccine AstraZeneca (ChAdOx1-S, Vaxzevria). We used several statistical methods, such as principal component analysis and binary classification, to analyze the correlation between pre-existing levels of antibodies, plasma cells, and memory B and T cells to the magnitude of the antibody response following a booster dose.Results and conclusions: We find that the magnitude of the antibody response to a booster depends on the number of pre-existing memory B cells, which, in turn, is highly correlated to the number of T helper cells and plasma cells, and the antibody titers. Pre-existing memory T cytotoxic cells and antibodies directly influence antigen availability hence limiting the magnitude of the immune response. The optimal immunogenicity of the third dose is achieved over a large time window, spanning from 6 to 16 months after the second dose. Interestingly, after any vaccine dose, individuals can be classified into two groups, sustainers and decayers, that differ in the kinetics of decline of their antibody titers due to differences in long-lived plasma cells. This suggests that the decayers may benefit from a tailored boosting schedule with a shorter interval to avoid the temporary loss of serological immunity.

immunological memory adenoviral COVID-19 vaccine booster in silico agent-based modeling (ABM) simulation anti-vector immunity
2022 Articolo in rivista open access

Functional Source Separation-Identified Epileptic Network: Analysis Pipeline

Olejarczyk Elzbieta ; Zappasodi Filippo ; Ricci Lorenzo ; Pascarella Annalisa ; Pellegrino Giovanni ; Paulon Luca ; Assenza Giovanni ; Tecchio Franca

This proof-of-concept (PoC) study presents a pipeline made by two blocks: 1. the identification of the network that generates interictal epileptic activity; and 2. the study of the time course of the electrical activity that it generates, called neurodynamics, and the study of its functional connectivity to the other parts of the brain. Network identification is achieved with the Functional Source Separation (FSS) algorithm applied to electroencephalographic (EEG) recordings, the neurodynamics quantified through signal complexity with the Higuchi Fractal Dimension (HFD), and functional connectivity with the Directed Transfer Function (DTF). This PoC is enhanced by the data collected before and after neuromodulation via transcranial Direct Current Stimulation (tDCS, both Real and Sham) in a single drug-resistant epileptic person. We observed that the signal complexity of the epileptogenic network, reduced in the pre-Real, pre-Sham, and post-Sham, reached the level of the rest of the brain post-Real tDCS. DTF changes post-Real tDCS were maintained after one month. The proposed approach can represent a valuable tool to enhance understanding of the relationship between brain neurodynamics characteristics, the effects of non-invasive brain stimulation, and epileptic symptoms.

Directed Transfer Function (DTF) EEG focal epilepsy Functional Source Separation (FSS) Higuchi Fractal Dimension (HFD) transcranial Direct Current Stimulation (tDCS)
2022 Articolo in rivista open access

Altered Brain Criticality in Schizophrenia: New Insights From Magnetoencephalography

Alamian Golnoush ; Lajnef Tarek ; Pascarella Annalisa ; Lina Jean Marc ; Knight Laura ; Walters James ; Singh Krish D ; Jerbi Karim

Schizophrenia has a complex etiology and symptomatology that is difficult to untangle. After decades of research, important advancements toward a central biomarker are still lacking. One of the missing pieces is a better understanding of how non-linear neural dynamics are altered in this patient population. In this study, the resting-state neuromagnetic signals of schizophrenia patients and healthy controls were analyzed in the framework of criticality. When biological systems like the brain are in a state of criticality, they are thought to be functioning at maximum efficiency (e.g., optimal communication and storage of information) and with maximum adaptability to incoming information. Here, we assessed the self-similarity and multifractality of resting-state brain signals recorded with magnetoencephalography in patients with schizophrenia patients and in matched controls. Schizophrenia patients had similar, although attenuated, patterns of self-similarity and multifractality values. Statistical tests showed that patients had higher values of self-similarity than controls in fronto-temporal regions, indicative of more regularity and memory in the signal. In contrast, patients had less multifractality than controls in the parietal and occipital regions, indicative of less diverse singularities and reduced variability in the signal. In addition, supervised machine-learning, based on logistic regression, successfully discriminated the two groups using measures of self-similarity and multifractality as features. Our results provide new insights into the baseline cognitive functioning of schizophrenia patients by identifying key alterations of criticality properties in their resting-state brain data.

complexity criticality machine-learning magnetoencephalography multifractal analysis resting-state scale-free dynamics
2022 Articolo in rivista open access

Normalized compression distance to measure cortico-muscular synchronization

Annalisa Pascarella ; Eugenia Gianni ; Matteo Abbondanza ; Karolina Armonaite ; Francesca Pitolli ; Massimo Bertoli ; Teresa L'Abbate ; Joy Grifoni ; Domenico Vitulano ; Vittoria Bruni ; Livio Conti ; Luca Paulon ; Franca Tecchio

The neuronal functional connectivity is a complex and non-stationaryphenomenon creating dynamic networks synchronization determining thebrain states and needed to produce tasks. Here, as a measure that quantifiesthe synchronization between the neuronal electrical activity of two brainregions, we used the normalized compression distance (NCD), which is thelength of the compressed file constituted by the concatenated two signals,normalized by the length of the two compressed files including each singlesignal. To test the NCD sensitivity to physiological properties, we used NCDto measure the cortico-muscular synchronization, a well-known mechanismto control movements, in 15 healthy volunteers during a weak handgrip.Independently of NCD compressor (Huffman or Lempel Ziv), we foundout that the resulting measure is sensitive to the dominant-non dominantasymmetry when novelty management is required (p = 0.011; p = 0.007,respectively) and depends on the level of novelty when moving the non-dominant hand (p = 0.012; p = 0.024). Showing lower synchronization levelsfor less dexterous networks, NCD seems to be a measure able to enrich theestimate of functional two-node connectivity within the neuronal networksthat control the body.

normalized compression distance (NCD) electrophysiology handedness neuronal synchronization feedback
2022 Poster in Atti di convegno open access

Retrieval of surface emissivity from FORUM-EE9 simulated measurements: optimization of constraints

FORUM (Far-infrared Outgoing Radiation Understanding and Monitoring) is a Fourier Transform Spectrometer (FTS) that will fly as the 9th ESA's Earth Explorer mission. FORUM will sound the atmosphere in the 100-1600 cm-1 region, covering the Far Infrared (FIR) and part of the Middle Infrared (MIR), accounting for more than 95% of the outgoing longwave flux lost by our planet. We review the constrains for the emissivity retrieval.

FORUM Emissivity Regularization
2022 Working paper metadata only access

The role of long distance contribution to the B->K(*)l+l- in the Standard Model

Massimo Ladisa ; Pietro Santorelli

We investigate rare semileptonic B->K*l+l- by looking at the long distance contributions. Our analysis is limited to the very small values of physical accessible range of invariant mass of the leptonic couple q2. We show that the light quarks loop has to be accounted for, along with the charming penguin contribution, in order to accurately compute the q2-spectrum in the Standard Model. Such a long distance contribution may also play a role in the analysis of the lepton flavour universality violation in this process.

High Energy Physics
2022 Articolo in rivista open access

Explainable Drug Repurposing Approach From Biased Random Walks

Drug repurposing is a highly active research area, aiming at finding novel uses for drugs that have been previously developed for other therapeutic purposes. Despite the flourishing of methodologies, success is still partial, and different approaches offer, each, peculiar advantages. In this composite landscape, we present a novel methodology focusing on an efficient mathematical procedure based on gene similarity scores and biased random walks which rely on robust drug-gene-disease association data sets. The recommendation mechanism is further unveiled by means of the Markov chain underlying the random walk process, hence providing explainability about how findings are suggested. Performances evaluation and the analysis of a case study on rheumatoid arthritis show that our approach is accurate in providing useful recommendations and is computationally efficient, compared to the state of the art of drug repurposing approaches.

Drug repurposing explainable artificial intelligence network medicine Markov chain biased random walk
2022 Articolo in rivista open access

Network Proximity-Based Drug Repurposing Strategy for Early and Late Stages of Primary Biliary Cholangitis

Shahini ; Endrit ; Pasculli ; Giuseppe ; Mastropietro ; Andrea ; Stolfi ; Paola ; Tieri ; Paolo ; Vergni ; Davide ; Cozzolongo ; Raffaele ; Pesce ; Francesco ; Giannelli ; Gianluigi

Primary biliary cholangitis (PBC) is a chronic, cholestatic, immune-mediated, and progressive liver disorder. Treatment to preventing the disease from advancing into later and irreversible stages is still an unmet clinical need. Accordingly, we set up a drug repurposing framework to find potential therapeutic agents targeting relevant pathways derived from an expanded pool of genes involved in different stages of PBC. Starting with updated human protein–protein interaction data and genes specifically involved in the early and late stages of PBC, a network medicine approach was used to provide a PBC “proximity” or “involvement” gene ranking using network diffusion algorithms and machine learning models. The top genes in the proximity ranking, when combined with the original PBC-related genes, resulted in a final dataset of the genes most involved in PBC disease. Finally, a drug repurposing strategy was implemented by mining and utilizing dedicated drug–gene interaction and druggable genome information knowledge bases (e.g., the DrugBank repository). We identified several potential drug candidates interacting with PBC pathways after performing an over-representation analysis on our initial 1121-seed gene list and the resulting disease-associated (algorithm-obtained) genes. The mechanism and potential therapeutic applications of such drugs were then thoroughly discussed, with a particular emphasis on different stages of PBC disease. We found that interleukin/EGFR/TNF-alpha inhibitors, branched-chain amino acids, geldanamycin, tauroursodeoxycholic acid, genistein, antioestrogens, curcumin, antineovascularisation agents, enzyme/protease inhibitors, and antirheumatic agents are promising drugs targeting distinct stages of PBC. We developed robust and transparent selection mechanisms for prioritizing already approved medicinal products or investigational products for repurposing based on recognized unmet medical needs in PBC, as well as solid preliminary data to achieve this goal.

autoimmune liver disease cholestatic diseases primary biliary cirrhosis primary sclerosing cholangitis drug repurposing network medicine
2022 Articolo in rivista restricted access

A moving boundary problem for reaction and diffusion processes in concrete: Carbonation advancement and carbonation shrinkage

The present work is devoted to modeling and simulation of the carbonation process in concrete. To this aim we introduce some free boundary problems which describe the evolution of calcium carbonate stones under the attack of $ {CO}_2 $ dispersed in the atmosphere, taking into account both the shrinkage of concrete and the influence of humidity on the carbonation process. Indeed, two different regimes are described according to the relative humidity in the environment. Finally, some numerical simulations here presented are in substantial accordance with experimental results taken from literature.

Concrete carbonation reaction and diffusion parabolic PDE model calibration finite difference schemes.
2022 Articolo in rivista restricted access

Saliency-based segmentation of dermoscopic images using colour information

Skin lesion segmentation is one of the crucial steps for an efficient non-invasive computer-aided early diagnosis of melanoma. This paper investigates how to use colour information, besides saliency, for determining the pigmented lesion region automatically. Unlike most existing segmentation methods using only the saliency to discriminate against the skin lesion from the surrounding regions, we propose a novel method employing a binarization process coupled with new perceptual criteria, inspired by the human visual perception, related to the properties of saliency and colour of the input image data distribution. As a means of refining the accuracy of the proposed method, the segmentation step is preceded by a pre-processing aimed at reducing the computation burden, removing artefacts, and improving contrast. We have assessed the method on two public databases, including 1497 dermoscopic images. We have also compared its performance with classical and recent saliency-based methods designed explicitly for dermoscopic images. The qualitative and quantitative evaluation indicates that the proposed method is promising since it produces an accurate skin lesion segmentation and performs satisfactorily compared to other existing saliency-based segmentation methods.

Dermoscopic images skin lesion colour image processing segmentation saliency map human visual perception
2022 Articolo in rivista open access

Wavelet-based robust estimation and variable selection in nonparametric additive models

Amato Umberto ; Antoniadis Anestis ; De Feis Italia ; Gijbels Irene

This article studies M-type estimators for fitting robust additive models in the presence of anomalous data. The components in the additive model are allowed to have different degrees of smoothness. We introduce a new class of wavelet-based robust M-type estimators for performing simultaneous additive component estimation and variable selection in such inhomogeneous additive models. Each additive component is approximated by a truncated series expansion of wavelet bases, making it feasible to apply the method to nonequispaced data and sample sizes that are not necessarily a power of 2. Sparsity of the additive components together with sparsity of the wavelet coefficients within each component (group), results into a bi-level group variable selection problem. In this framework, we discuss robust estimation and variable selection. A two-stage computational algorithm, consisting of a fast accelerated proximal gradient algorithm of coordinate descend type, and thresholding, is proposed. When using nonconvex redescending loss functions, and appropriate nonconvex penalty functions at the group level, we establish optimal convergence rates of the estimates. We prove variable selection consistency under a weak compatibility condition for sparse additive models. The theoretical results are complemented with some simulations and real data analysis, as well as a comparison to other existing methods.

Additive regression Contamination M-estimation Nonconvex penalties Variable selection Wavelet thresholding
2022 Articolo in rivista restricted access

QUALITATIVE ANALYSIS OF DYNAMIC EQUATIONS ON TIME SCALES USING LYAPUNOV FUNCTIONS

ELEONORA MESSINA ; YOUSSEF RAFFOUL ; ANTONIA VECCHIO

We employ Lyapunov functions to study boundedness and stability of dynamic equationson time scales. Most of our Lyapunov functions involve the term |x| and its ?-derivative.In particular, we prove general theorems regarding qualitative analysis of solutions of delaydynamical systems and then use Lyapunov functionals that partially include |x| to provide examples.

Time scales delta derivative dynamic equations delay bounded stability
2022 Articolo in rivista restricted access

A non-standard numerical scheme for an age-of-infection epidemic model

We propose a numerical method for approximating integro-differential equations arising in age-of-infection epidemic models. The method is based on a non-standard finite differences approximation of the integral term appearing in the equation. The study of convergence properties and the analysis of the qualitative behavior of the numerical solution show that it preserves all the basic properties of the continuous model with no restrictive conditions on the step-length h of integration and that it recovers the continuous dynamic as h tends to zero.

Non-standard finite difference scheme Volterra integro-differential equations Epidemic models