Metabolites are emerging as key mediators of crosstalk between metabolic flux, cellular signaling, and epigenetic regulation of cell fate. We found that the nonessential amino acid L-proline (L-Pro) acts as a signaling molecule that promotes the conversion of embryonic stem cells into mesenchymal-like, spindle-shaped, highly motile, invasive pluripotent stem cells. This embryonic-stem-cell-to-mesenchymal-like transition (esMT) is accompanied by a genome-wide remodeling of the H3K9 and H3K36 methylation status. Consistently, L-Pro-induced esMT is fully reversible either after L-Pro withdrawal or by addition of ascorbic acid (vitamin C), which in turn reduces H3K9 and H3K36 methylation, promoting a mesenchymal-like-to-embryonic-stem-cell transition (MesT). These findings suggest that L-Pro, which is produced by proteolytic remodeling of the extracellular matrix, may act as a microenvironmental cue to control stem cell behavior.
Numerical approximation of one-dimensional kinetic models for directed motion of bacterial populations in response to a chemical gradient, usually called {\it chemotaxis}, is considered in the framework of well-balanced (WB) schemes. The validity of one-dimensional models have been shown to be relevant for the simulation of more general situations with symmetry in all but one direction along which appears the chemical attractant gradient. Two main categories are considered depending on whether or not the kinetic equation with specular boundary conditions admits non-constant macroscopic densities for large times. The WB schemes are endowed with the property of having zero artificial viscosity at steady-state; in particular they furnish numerical solutions for which the macroscopic flux vanishes, a feature that more conventional discretizations can miss. A class of equations which admit constant asymptotic states can be treated by a slight variation of the method of Case's elementary solutions originally developed for radiative transfer problems. More involved models which can display concentrations are handled through a different, but closely related, treatment of the tumbling term at the computational grid's interfaces. Both types of WB algorithms can be implemented efficiently relying on the Sherman-Morrison formula for computing interface values. Transient and stationary numerical results are displayed for several test-cases.
The dynamics and rheology of suspensions of fluid vesicles or red blood cells is investigated by a combination of molecular dynamics and mesoscale hydrodynamics simulations in two dimensions. The vesicle suspension is confined between two no-slip walls, which are driven externally to generate a shear flow with shear rate (gamma) over dot. The flow behavior is studied as a function of (gamma) over dot, the volume fraction of vesicles, and the viscosity contrast between inside and outside fluids. Results are obtained for the encounter and interactions of two vesicles, the intrinsic viscosity of the suspension, and the cell-free layer near the walls.
One of the core European Union environmental policies is the creation and monitoring of the Natura 2000 network of protected areas. This network has been explicitly established for the preservation of conservation priority habitat types and species. Still the concept of habitat is a key concept for ecologists that remains ill defined and is notoriously hard to quantify and measure. Several classification schemes have been put forward, but their relative strengths and weaknesses remain less well examined. In this study we analyzed 8 different Natura 2000 sites (3 Greek, 2 Italian, 2 Portuguese, 1 British). Our study sites reflect a variety of ecosystems, most of them are Mediterranean (7 of the 8) and most of them are wetlands (6 of the 8). In each site, we classified habitats according to 4 different classification schemes (Annex I of the Habitats Directive, Corine Biotopes, EUNIS and General Habitat categories). Also, we used three other widely used land cover classification schemes (namely Corine Land Cover, FAO Land Cover Classification System and IGBP DIS scheme). We found that the different schemes produced considerably different values of landscape diversity leading even to different ranking of the sites according to their diversity. Furthermore, when comparing the landscape composition among sites according to the different schemes, they led to different inferences. Our results imply that the classification scheme used for estimating habitat composition plays an important role for the monitoring of protected areas, perhaps more important than previously assumed.
2013Contributo in Atti di convegnometadata only access
Comparison of Land Cover/Land Use and Habitat classification systems for Habitat mapping from space: strengths and weaknesses evidenced in Mediterranean sites of Natura 2000 network
At a global level, protected sites have been established for the primary purpose of conserving biodiversity, with survey and monitoring of habitats undertaken largely within their boundaries. However, because of increasing human populations with greater access to resources, there is a need to now consider monitoring anthropic activities in the surrounding landscapes as pressures and disturbances are impacting on the functioning and biodiversity values of many protected sites. Earth Observation (EO) data acquired across a range of spatial and temporal scales offer new opportunities for monitoring biodiversity over varying time-scales, either through direct or indirect mapping of species or habitats. However, Land Cover (LC) and/or Land Use (LU), rather than habitat maps are generated in many national and international programs and, whilst the translation from one classification to the other is desirable, differences in definitions and criteria have so far limited the establishment of a unified approach. Focusing on both natural and non-natural environments associated with Natura 2000 sites in the Mediterranean, this paper considers the extent to which three common LC/LU taxonomies (CORINE, the Food and Agricultural Organisation (FAO) Land Cover Classification System (FAO-LCCS) and the IGBP) can be translated to habitat taxonomies with minimum use of additional environmental attributes and/or in situ data. A qualitative and quantitative analysis based on the Jaccard's index established the FAOLCCS as being the most useful taxonomy for harmonizing LC/LU maps with different legends and dealing with the complexity of habitat description and as a framework for translating EO-derived LC/LU to habitat categories. As demonstration, a habitat map of a wetland site is obtained through translation of the LCCS taxonomy.