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2009 Articolo in rivista metadata only access

Managing Structured bonds: an analysis through RAROC and EVA

Orlando A ; Cocozza R

The paper investigates a decision criterion for structured bonds portfolio choices. The main issue is the application of risk-adjusted indicators as tools to select either the asset portfolio given a structured bond, or the bond structure given an existing coverage asset portfolio. Such an indicator is suitable for the appraisal of both portfolio management and the potential profits of the structured issue. The selection tool is put into an asset and liability management decision-making context, where the relationship between the expected profit and the capital-at-risk are compared in order to evaluate the issue of the bond and the expected rate of return of the whole portfolio. The case is referred to an equity-linked bond and treated by means of Monte Carlo simulations to identify the best portfolio according to the issuer targets and constraints.

portfolio management equity linked notes economic value added risk analysis
2009 Articolo in rivista metadata only access

Numerical simulation of conformational variability in biopolymer translocation through wide nanopores

Fyta Maria ; Fyta Maria ; Melchionna Simone ; Melchionna Simone ; Bernaschi Massimo ; Kaxiras Efthimios ; Kaxiras Efthimios ; Succi Sauro ; Succi Sauro

Numerical results on the translocation of long biopolymers through mid-sized and wide pores are presented. The simulations are based on a novel methodology which couples molecular motion to a mesoscopic fluid solvent. Thousands of events of long polymers (up to 8000 monomers) are monitored as they pass through nanopores. Comparison between the different pore sizes shows that wide pores can host a larger number of multiple biopolymer segments, as compared to smaller pores. The simulations provide clear evidence of folding quantization in the translocation process as the biopolymers undertake multi-folded configurations, characterized by a well-defined integer number of folds. Accordingly, the translocation time is no longer represented by a single-exponent power-law dependence on the length, as is the case for single-file translocation through narrow pores. The folding quantization increases with the biopolymer length, while the rate of translocated beads at each time step is linearly correlated with the number of resident beads in the pore. Finally, analysis of the statistics over the translocation work unravels the importance of the hydrodynamic interactions in the process. © 2009 IOP Publishing Ltd.

Copolymers Dynamics (theory) Lattice Boltzmann methods Molecular dynamics Polyelectrolytes and biomolecular solutions Polymers
2009 Rapporto di ricerca / Relazione scientifica metadata only access

Electric current density imaging via an accelerated iterative algorithm with joint sparsity constraints

Bretti Gabriella ; Fornasier Massimo ; Pitolli Francesca

Many problems in applied sciences require to spatially resolve an unknown electrical current distribution from its external magnetic field. Electric currents emit magnetic fields which can be measured by sophisticated superconducting devices in a noninvasive way. Applications of this technique arise in several fields, such as medical imaging and non-destructive testing, and they involve the solution of an inverse problem. Assuming that each component of the current density vector possesses the same sparse representation with respect to a preassigned multiscale basis, allows us to apply new regularization techniques to the magnetic inverse problem. The solution of linear inverse problems with sparsity constraints can be efficiently obtained by iterative algorithms based on gradient steps intertwined with thresholding operations. We test this algorithms to numerically solve the magnetic inverse problem with a joint sparsity constraint.

iterative thresholding algorithm magnetoencephalography
2009 Contributo in Atti di convegno metadata only access

MANIA: A Gene Network Reverse Algorithm for Compounds Mode-of-Action and Genes Interactions Inference

Lai Darong ; Lu Hongtao ; Lauria Mario ; di Bernardo Diego ; Nardini Christine

Understanding the complexity of the cellular machinery represents a grand challenge in molecular biology. To contribute to the deconvolution of this complexity, a novel inference algorithm based on linear ordinary differential equations is proposed, based on high-throughput gene expression data. The algorithm can infer (i) gene-gene interactions from steady state expression profiles AND (ii) mode-of-action of the components that can trigger changes in the system. Results demonstrate that the proposed algorithm can identify both information with high performances, thus overcoming the limitation of current algorithms that can infer reliably only one.

gene network gene expression reverse engineering Ordinary Differential Equations (ODE) compound mode-of-action
2008 Articolo in rivista metadata only access

Human models of aging and longevity

Cevenini E ; Invidia L ; Lescai F ; Salvioli S ; Tieri P ; Castellani G ; Franceschi Claudio

Background: The aging phenotype in humans is very heterogeneous and can be described as a complex mosaic resulting from the interaction of a variety of environmental, stochastic and genetic-epigenetic variables. Therefore, each old person must be considered as a singleton, and consequently the definition of 'aging phenotype' is very difficult. Objective: We discuss the phenotype of centenarians, the best example of successful aging, as well as other models exploited to study human aging and longevity, such as families enriched in long-living subjects, twins and cohorts of unrelated subjects. Methods: A critical review of literature available until March 2008. Conclusions: No single model can be considered the gold standard for the study of aging and longevity, instead the combination of results obtained from different models must be considered in order to better understand these complex phenomena. We propose that a systems biology concept such as that of 'bow-tie' architecture useful for managing information flow, could help in this demanding task. © 2008 Informa UK Ltd.

Aging Centenarians Longevity Systems biology Twins
2008 Articolo in rivista metadata only access

Different types of cell death in organismal aging and longevity: State of the art and possible systems biology approach

Salvioli Stefano ; Capri Miriam ; Tieri Paolo ; Loroni Jonathan ; Barbi Cristiana ; Invidia Laura ; Altilia Serena ; Santoro Aurelia ; Pirazzini Chiara ; Pierini Michela ; Bellavista Elena ; Alberghina Lilia ; Franceschi Claudio

Cell death is as important as cell proliferation for cell turn-over, and susceptibility to cell death is affected by a number of parameters that change with time. A time-dependent derangement of such a crucial process, or even the simple cell loss mediated by cell death impinges upon aging and longevity. In this review we will discuss how cell death phenomena are modulated during aging and what is their possible role in the aging process. We will focus on apoptosis and autophagy, which affect mostly proliferating and post-mitotic cells, respectively, and on mitochondrial degradation in long living cells. Since the "decisional process" that leads the cell to death is very complex, we will also discuss the possibility to address this topic with a systems biology approach. © 2008 Bentham Science Publishers Ltd.

systems biology network biology aging immunology
2008 Articolo in rivista metadata only access

Dimensionality and morphology of particle and bubble clusters in turbulent flow

Calzavarini E ; Kerscher M ; Lohse D ; Toschi F
2008 Articolo in rivista metadata only access

Localized empirical discriminant analysis

Cutillo L ; Amato U

Some empirical localized discriminant analysis methods for classifying images are introduced. They use spatial correlation of images in order to improve classification reducing the `pseudo-nuisance' present in pixel-wise discriminant analysis. The result is obtained through an empirical (data driven) and local (pixelwise) choice of the prior class probabilities. Local empirical discriminant analysis is formalized in a framework that focuses on the concept of visibility of a class that is introduced. Numerical experiments are performed on synthetic and real data. In particular, methods are applied to the problem of retrieving the cloud mask from remotely sensed images. In both cases classical and new local discriminant methods are compared to the ICM method.

Classification Discriminant Analysis Localization Density estimation Clouds
2008 Articolo in rivista metadata only access

A Schur-based algorithm for computing bounds to the smallest eigenvalue of a symmetric positive definite Toeplitz matrix

Mastronardi N ; Van Barel M ; Vandebril R
Toeplitz matrix symmetric positive definite matrix generalized Schur algorithm eigenvalues signal processing
2008 Articolo in rivista metadata only access

A nonlocal problem arising in the study of magneto-elastic interactions

Chipot M ; Shafrir I ; Valente V ; Vergara Caffarelli G
2008 Articolo in rivista metadata only access

Hydrodynamic correlations in the translocation of a biopolymer through a nanopore: Theory and multiscale simulations

Fyta M ; Melchionna S ; Succi S ; Kaxiras E

We investigate the process of biopolymer translocation through a narrow pore using a multiscale approach which explicitly accounts for the hydrodynamic interactions of the molecule with the surrounding solvent. The simulations confirm that the coupling of the correlated molecular motion to hydrodynamics results in significant acceleration of the translocation process. Based on these results, we construct a phenomenological model which incorporates the statistical and dynamical features of the translocation process and predicts a power-law dependence of the translocation time on the polymer length with an exponent alpha approximate to 1.2. The actual value of the exponent from the simulations is alpha=1.28 +/- 0.01, which is in excellent agreement with experimental measurements of DNA translocation through a nanopore, and is not sensitive to the choice of parameters in the simulation. The mechanism behind the emergence of such a robust exponent is related to the interplay between the longitudinal and transversal dynamics of both translocated and untranslocated segments. The connection to the macroscopic picture involves separating the contributions from the blob shrinking and shifting processes, which are both essential to the translocation dynamics.

DRIVEN POLYMER TRANSLOCATION LATTICE BOLTZMANN-EQUATION SOLID-STATE NANOPORE MOLECULAR-DYNAMICS DNA TRANSLOCATION
2008 Software open access

pySigma

Riorganizzazione della libreria relativa al sistema di segmentazione fast marching Sigma (Sistema Interattivo per la seGmentazione di imMagini) mediante script Python e librerie C++, attraverso il wrapper generato con SWIG (Simple Wrapper Image Generator). Relazione finale di cui all'art. 4 del contratto di prestazione d'opera in regime di lavoro autonomo occasionale tra l'Istituto per le Applicazioni del Calcolo "Mauro Picone" e l'Ing. Massimo Miozzi (N. 0000729 del 16/06/2008)

python image segmentation C++ swig
2008 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Bayesian methods for time course microarray

2008 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Bayesian variable selection, phylogenetic information, replicated experiments:a productive marriage for the identification of transcription factors

2008 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Bayesian Models for the two-sample time-course microarray experiments

2008 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Hybrid lattice Boltzmann model for binary fluid mixtures

2008 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Hybrid lattice Boltzmann model for binary fluid mixtures

2008 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Hybrid lattice Boltzmann model for binary fluid mixtures

2008 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Two-Dimensional Fluctuating Vesicles in Shear Flow

2008 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Medida das deformações do terreno nos Açores por interferometria radar: função da correcção atmosferica