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2011 Articolo in rivista metadata only access

Reactive Rayleigh-Taylor systems: Front propagation and non-stationarity

Biferale L ; Mantovani F ; Sbragaglia M ; Scagliarini A ; Toschi F ; Tripiccione R

Reactive Rayleigh-Taylor systems are characterized by the competition between the growth of the instability and the rate of reaction between cold (heavy) and hot (light) phases. We present results from state-of-the-art numerical simulations performed at high resolution in 2d by means of a self-consistent lattice Boltzmann (LB) method which evolves the coupled momentum and temperature equations and includes a reactive term. We tune parameters in order to address the competition between turbulent mixing and reaction, ranging from slow-to fast-reaction rates. We also study the mutual feedback between turbulence evolution driven by the Rayleigh-Taylor instability and front propagation against gravitational acceleration. We quantify both the enhancement of "flame" propagation due to turbulent mixing for the case of slow reaction-rate as well as the slowing-down of turbulence growth for the fast-reaction case, when the front quickly burns the gravitationally unstable phase. An increase of intermittency at small scales for temperature characterizes the case of fast reaction, associated to the formation of sharp wrinkled fronts separating pure burnt/unburnt fluids regions.

2011 Articolo in rivista metadata only access

Pattern study of thermal phase separation for binary fluid mixtures

A Tiribocchi ; A Piscitelli ; G Gonnella ; A Lamura

Purpose - The purpose of this paper is to present numerical results about phase separation of binary fluid mixtures quenched by contact with cold walls. Design/methodology/approach - The thermal phase separation is simulated by using a hybrid lattice Boltzmann method that solves the continuity and the Navier-Stokes equations. The equations for energy and concentration are solved by using a finite-difference scheme. This approach provides a complete description of the thermo-hydrodynamic effects in the mixture. Findings - A rich variety of domain patterns are found depending on the viscosity and on the heat conductivity of the mixture. Ordered lamellar structures are observed at high viscosity while domains rounded in shape dominate the phase separation at low viscosity, where two scales characterize the growth of domains. Research limitations/implications - The present approach provides a numerical method that can be extended to other systems such as liquid-vapor or lamellar systems. Moreover, a three-dimensional study can give a complete picture of thermo-hydrodynamic effects. Originality/value - This paper provides a consistent thermodynamic theoretical framework for a binary fluid mixture and a numerically stable method to simulate them.

matematica applicata
2011 Articolo in rivista metadata only access

Rotational behaviour of red blood cells in suspension: a mesoscale simulation study

Janoschek F ; Mancini F ; Harting J ; Toschi F

The nature of blood as a suspension of red blood cells makes computational haemodynamics a demanding task. Our coarse-grained blood model, which builds on a lattice Boltzmann method for soft particle suspensions, enables the study of the collective behaviour of the order of 10(6) cells in suspension. After demonstrating the viscosity measurement in Kolmogorov flow, we focus on the statistical analysis of the cell orientation and rotation in Couette flow. We quantify the average inclination with respect to the flow and the nematic order as a function of shear rate and haematocrit. We further record the distribution of rotation periods around the vorticity direction and find a pronounced peak in the vicinity of the theoretical value for free model cells, even though cell-cell interactions manifest themselves in a substantial width of the distribution.

2011 Articolo in rivista metadata only access

Numerical simulations of Rayleigh-Taylor front evolution in turbulent stratified fluids

Biferale L ; Mantovani F ; Pozzati F ; Sbragaglia M ; Scagliarini A ; Schifano F ; Toschi F ; Tripiccione R

We present state-of-the-art numerical simulations of a two-dimensional Rayleigh-Taylor instability for a compressible stratified fluid. We describe the computational algorithm and its implementation on the QPACE supercomputer. High resolution enables the statistical properties of the evolving interface that we characterize in terms of its fractal dimension to be studied.

2011 Articolo in rivista metadata only access

Second-order closure in stratified turbulence: Simulations and modeling of bulk and entrainment regions

Biferale L ; Mantovani F ; Sbragaglia M ; Scagliarini A ; Toschi F ; Tripiccione R

The parametrization of small-scale turbulent fluctuations in convective systems and in the presence of strong stratification is a key issue for many applied problems in oceanography, atmospheric science, and planetology. In the presence of stratification, one needs to cope with bulk turbulent fluctuations and with inversion regions, where temperature, density, or both develop highly nonlinear mean profiles due to the interactions between the turbulent boundary layer and the unmixed-stable-flow above or below it. We present a second-order closure able to cope simultaneously with both bulk and boundary layer regions, and we test it against high-resolution state-of-the-art two-dimensional numerical simulations in a convective and stratified belt for values of the Rayleigh number up to Ra similar to 10(10). Data are taken from a Rayleigh-Taylor system confined by the existence of an adiabatic gradient.

2011 Articolo in rivista metadata only access

Earlier is better: a timely HAART initiation may pave the way for best controllers

Paci P ; Martini F ; Bernaschi M ; D'Offizi G ; Castiglione F
2011 Articolo in rivista metadata only access

Development of Immune-Specific Interaction Potentials and Their Application in the Multi-Agent-System VaccImm

Woelke AL ; von Eichborn J ; Murgueitio MS ; Worth CL ; Castiglione F ; Preissner R
2011 Articolo in rivista metadata only access

Global dynamics of difference equations for SIR epidemic models with a class of nonlinear incidence rates

Enatsu Y ; Nakata Y ; Muroya Y ; Izzo G ; Vecchio A
2011 Articolo in rivista metadata only access

Multi-time multi-scale correlation functions in hydrodynamic turbulence

Biferale L ; Calzavarini E ; Toschi F

High Reynolds numbers Navier-Stokesequations are believed to break self-similarity concerning both spatial and temporal properties: correlation functions of different orders exhibit distinct decorrelation times and anomalous spatial scaling properties. Here, we present a systematic attempt to measure multi-time and multi-scale correlations functions, by using high Reynolds numbers numerical simulations of fully homogeneous and isotropic turbulent flow. The main idea is to set-up an ensemble of probing stations riding the flow, i.e., measuring correlations in a reference frame centered on the trajectory of distinct fluid particles (the quasi-Lagrangian reference frame introduced by Belinicher and L'vov [Sov. Phys. JETP 66, 303 (1987)]). In this way, we reduce the large-scale sweeping and measure the non-trivial temporal dynamics governing the turbulent energy transfer from large to small scales. We present evidences of the existence of the dynamic multiscaling properties of turbulence - first proposed by L'vov et al. [Phys. Rev. E 55, 7030 (1997)] - in which multi-time correlation functions are characterized by an infinite set of characteristic times.

2011 Articolo in rivista metadata only access

Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains

Das Gupta S ; Hu X ; Keizers PHJ ; Liu WM ; Luchinat C ; Nagulapalli M ; Overhand M ; Parigi G ; Sgheri L ; Ubbink M
2011 Articolo in rivista metadata only access

Explicit symplectic partitioned Runge-Kutta-Nyström methods for non autonomous dynamics

We consider explicit symplectic partitioned Runge-Kutta (ESPRK) methods for the numerical integration of non-autonomous dynamical systems. It is known that, in general, the accuracy of a numerical method can diminish considerably whenever an explicit time dependence enters the differential equations and the order reduction can depend on the way the time is treated. In the present paper, we demonstrate that explicit symplectic partitioned Runge-Kutta-Nyström (ESPRKN) methods specifically designed for second order differential equations , undergo an order reduction when M=M(t), independently of the way the time is approximated. Furthermore, by means of symmetric quadrature formulae of appropriate order, we propose a different but still equivalent formulation of the original non-autonomous problem that treats the time as two added coordinates of an enlarged differential system. In so doing, the order reduction is avoided as confirmed by the presented numerical tests.

Symplectic partitioned Runge-Kutta methods Order analysis Nyström methods
2011 Articolo in rivista metadata only access

Comparing analytical and numerical solution of a nonlinear two-delay integral equations.

Messina E ; Russo E ; Vecchio A

Numerical solution of two delays Volterra Integral Equations is considered and the stability is studied on a nonlinear test equation by carrying out a parallel investigation both on the continuous and the discrete problem.

Direct Quadrature methods Double delays Stability; Volterra Integral Equations
2011 Articolo in rivista metadata only access

Modelling wall shear stress in small arteries using Lattice Boltzmann method: influence of the endothelial wall profile

Pontrelli G ; König CS ; Halliday I ; Spencer TJ ; Collins MW ; Long Q ; Succi S
2011 Articolo in rivista metadata only access

Fusing in vivo and ex vivo NMR sources of information for brain tumor classification

CroitorSava A R ; MartinezBisbal MC ; Laudadio T ; Piquer J ; Celda B ; Heerschap A ; Sima DM ; Van Huffel S

In this study we classify short echo-time brain magnetic resonance spectroscopic imaging (MRSI) data by applying a model-based canonical correlation analyses algorithm and by using, as prior knowledge, multimodal sources of information coming from high-resolution magic angle spinning (HR-MAS), MRSI and magnetic resonance imaging. The potential and limitations of fusing in vivo and ex vivo nuclear magnetic resonance sources to detect brain tumors is investigated. We present various modalities for multimodal data fusion, study the effect and the impact of using multimodal information for classifying MRSI brain glial tumors data and analyze which parameters influence the classification results by means of extensive simulation and in vivo studies. Special attention is drawn to the possibility of considering HR-MAS data as a complementary dataset when dealing with a lack of MRSI data needed to build a classifier. Results show that HR-MAS information can have added value in the process of classifying MRSI data.

Canonical Correlation Analysis Multimodal data fusion brain tumor classification High Resolution Magic Angle Spinning
2011 Articolo in rivista metadata only access

Fermi coordinates in Schwarzschild spacetime: closed form expressions

Bini D ; Geralico A ; Jantzen RT
2011 Articolo in rivista metadata only access

Spin-geodesic deviations in the Schwarzschild spacetime

Bini D ; Geralico A ; Jantzen R T
2011 Articolo in rivista metadata only access

The general relativistic Poynting-Robertson effect II: A photon flux with nonzero angular momentum

Bini D ; Geralico A ; Jantzen R T ; Semerak O ; Stella L
2011 Articolo in rivista metadata only access

Effective geometry of a white dwarf

Bini D ; Cherubini C ; Filippi S
2011 Articolo in rivista metadata only access

Accelerated orbits in black hole fields: the static case

Bini D ; de Felice F ; Geralico A
2011 Articolo in rivista metadata only access

A new boundary condition for three-dimensional Lattice Boltzmann simulations of capillary filling in rough microchannels

De Maio A ; Palpacelli S ; Succi S