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2024 Articolo in rivista restricted access

Fourth post-Minkowskian local-in-time conservative dynamics of binary systems

Bini D. ; Damour T.

We compute the purely local-in-time (scale-free and logarithm-free) part of the conservative dynamics of gravitationally interacting two-body systems at the fourth post-Minkowskian order, and at the thirtieth order in velocity. The gauge-invariant content of this fourth post-Minkowskian local dynamics is given in two ways: (i) its contribution to the on-shell action (for both hyperboliclike and ellipticlike motions); and (ii) its contribution to the effective one-body Hamiltonian (in energy gauge). Our computation capitalizes on the tutti frutti approach [D. Bini, Novel approach to binary dynamics: Application to the fifth post-Newtonian level, Phys. Rev. Lett. 123, 231104 (2019)PRLTAO0031-900710.1103/PhysRevLett.123.231104] and on recent post-Minkowskian advances [Z. Bern, Scattering amplitudes, the tail effect, and conservative binary dynamics at O(G4), Phys. Rev. Lett. 128, 161103 (2022)PRLTAO0031-900710.1103/PhysRevLett.128.161103; C. Dlapa, Conservative dynamics of binary systems at fourth post-Minkowskian order in the large-eccentricity expansion, Phys. Rev. Lett. 128, 161104 (2022)PRLTAO0031-900710.1103/PhysRevLett.128.161104; C. Dlapa, Local in time conservative binary dynamics at fourth post-Minkowskian order, 132, 221401 (2024)PRLTAO0031-900710.1103/PhysRevLett.132.221401].

Two-body system, conservative dynamics, 4PM
2024 Articolo in rivista open access

Gravitational waveforms: A tale of two formalisms

Bini D. ; Damour T. ; De Angelis S. ; Geralico A. ; Herderschee A. ; Roiban R. ; Teng F.

We revisit the quantum-amplitude-based derivation of the gravitational waveform emitted by the scattering of two spinless massive bodies at the third order in Newton's constant, h∼G+G2+G3 (one-loop level), and correspondingly update its comparison with its classically derived multipolar-post-Minkowskian counterpart. A spurious-pole-free reorganization of the one-loop five-point amplitude substantially simplifies the post-Newtonian expansion. We find complete agreement between the two results up to the fifth order in the small velocity expansion after taking into account three subtle aspects of the amplitude derivation: (1) in agreement with [A. Georgoudis et al., J. High Energy Phys. 03 (2024) 08910.1007/JHEP03(2024)089], the term quadratic in the amplitude in the observable-based formalism [D. A. Kosower et al., J. High Energy Phys. 02 (2019) 137JHEPFG1029-847910.1007/JHEP02(2019)137] generates a frame rotation by half the classical scattering angle; (2) the dimensional regularization of the infrared divergences of the amplitude introduces an additional (d-4)/(d-4) finite term; and (3) zero-frequency gravitons are found to contribute additional terms both at order h∼G1 and at order h∼G3 when including disconnected diagrams in the observable-based formalism.

Two body problem, waveform, 4PM
2024 Articolo in rivista restricted access

Particle motion in a rotating dust spacetime

Astesiano D. ; Bini D. ; Geralico A. ; Ruggiero M. L.

We investigate the geometrical properties, spectral classification, geodesics, and causal structure of Bonnor's spacetime [W. B. Bonnor, A rotating dust cloud in general relativity, J. Phys. A 10, 1673 (1977)JPHAC50305-447010.1088/0305-4470/10/10/004], i.e., a stationary axisymmetric solution with a rotating dust as a source. This spacetime has a directional singularity at the origin of the coordinates (related to the diverging vorticity field of the fluid there), which is surrounded by a toroidal region where closed timelike curves (CTCs) are allowed, leading to chronology violations. We use the effective potential approach to provide a classification of the different kind of geodesic orbits on the symmetry plane as well as to study the helical-like motion around the symmetry axis on a cylinder with constant radius. In the former case we find that, as a general feature for positive values of the angular momentum, test particles released from a fixed space point and directed toward the singularity are repelled and scattered back as soon as they approach the CTC boundary, without reaching the central singularity. In contrast, for negative values of the angular momentum there exist conditions in the parameter space for which particles are allowed to enter the pathological region. Finally, as a more realistic mechanism, we study accelerated orbits undergoing friction forces due to the interaction with the background fluid, which may also act in order to prevent particles from approaching the CTC region.

Particle's motion in a rotating spacetime, Bonnor's solution
2024 Articolo in rivista restricted access

On Fermi’s Resolution of the “4/3 Problem” in the Classical Theory of the Electron

Bini D. ; Geralico A. ; Jantzen R. T. ; Ruffini R.

We discuss the solution proposed by Fermi to the so called “4/3 problem” in the classical theory of the electron, a problem which puzzled the physics community for many decades before and after his contribution. Unfortunately his early resolution of the problem in 1922–1923 published in three versions in Italian and German journals (after three preliminary articles on the topic) went largely unnoticed. Even more recent texts devoted to classical electron theory still do not present his argument or acknowledge the actual content of those articles. The calculations initiated by Fermi at the time are completed here by formulating and discussing the conservation of the total 4-momentum of the accelerated electron as seen from the instantaneous rest frame in which it is momentarily at rest.

Accelerated frames Classical theory of the electron Fermi coordinates Maxwell’s equations
2024 Articolo in rivista open access

Emulsions in microfluidic channels with asymmetric boundary conditions and directional surface roughness: stress and rheology

Pelusi F. ; Filippi D. ; Derzsi L. ; Pierno M. ; Sbragaglia M.

The flow of emulsions in confined microfluidic channels is affected by surface roughness. Directional roughness effects have recently been reported in channels with asymmetric boundary conditions featuring a flat wall, and a wall textured with directional roughness, the latter promoting a change in the velocity profiles when the flow direction of emulsions is inverted [D. Filippi et al., Adv. Mater. Technol., 2023, 8, 2201748]. An operative protocol is needed to reconstruct the stress profile inside the channel from velocity data to shed light on the trigger of the directional response. To this aim, we performed lattice Boltzmann numerical simulations of the flow of model emulsions with a minimalist model of directional roughness in two dimensions: a confined microfluidic channel with one flat wall and the other patterned by right-angle triangular-shaped posts. Simulations are essential to develop a protocol based on mechanical arguments to reconstruct stress profiles. Hence, one can analyze data to relate directional effects in velocity profiles to different rheological responses close to the rough walls associated with opposite flow directions. We finally show the universality of this protocol by applying it to other realizations of directional roughness by considering experimental data on emulsions in a microfluidic channel featuring a flat wall and a wall textured by herringbone-shaped roughness.

emulsions, lattice Boltzmann simulations, rheology
2024 Articolo in rivista restricted access

Analytical prediction for the steady-state behavior of a confined drop with interface viscosity under shear flow

Guglietta F. ; Pelusi F.

The steady-state behavior of a single drop under shear flow has been extensively investigated in the limit of small deformation and negligible inertia effects. In this work, we combine the calculations proposed by Flumerfelt [R. W. Flumerfelt, J. Colloid Interface Sci. 76, 330 (1980)0021-979710.1016/0021-9797(80)90377-X] for unconfined drops with interface viscosity, with those by Shapira and Haber [M. Shapira and S. Haber, Int. J. Multiphase Flow 16, 305 (1990)0301-932210.1016/0301-9322(90)90061-M] for confined drops without interface viscosity. By merging these two approaches, we provide comprehensive analytical predictions for steady-state drop deformation and inclination angle across a wide range of physical conditions, from confined to unconfined droplets, including or excluding the effect of interface viscosity. The proposed analytical predictions are also robust concerning variations in the viscosity ratio, making our model general enough to include any of the above conditions.

Drop, shear flow, interface viscosity
2024 metadata only access

Regularity results to a class of Elliptic equations with explicit U-dependence and Orlicz growth .

Claudia Capone ; Antonia Passarelli di Napoli

We study the regularity properties of the weak solutions u : Ω ⊆ Rn → R to elliptic problems −div a(x,Du) + b(x)φ′(|u|) u |u| = f in Ω , u = 0 on ∂Ω , with Ω ⊂ Rn a bounded open set and where the function a(x, ξ) satisfies growth conditions with respect to the second variable expressed through an N-function φ. We prove that, under a suitable interplay between the lower order terms and the datum f, which is assumed only to belong to L1(Ω), the solutions are bounded in Ω. Next, if a(x, ξ) depends on x through a H ̈older continuous function we take advantage from the boundedness of the solution u to prove the higher differentiability and the higher integrability of its gradient, under mild assumptions on the data.

Higher differentiability. Higher integrability. Boundedness of solutions. Interpolation inequality
2024 Articolo in rivista open access

On the modulus of continuity of fractional Orlicz-Sobolev functions

Alberico A. ; Cianchi A. ; Pick L. ; Slavikova L.

Necessary and sufficient conditions are presented for a fractional Orlicz-Sobolev space on Rn to be continuously embedded into a space of uniformly continuous functions. The optimal modulus of continuity is exhibited whenever these conditions are fulfilled. These results pertain to the supercritical Sobolev regime and complement earlier sharp embeddings into rearrangement-invariant spaces concerning the subcritical setting. Classical embeddings for fractional Sobolev spaces into Hölder spaces are recovered as special instances. Proofs require novel strategies, since customary methods fail to produce optimal conclusions.

46E30 46E35
2024 Articolo in rivista open access

Cross-Component Energy Transfer in Superfluid Helium-4

Stasiak P. Z. ; Baggaley A. W. ; Krstulovic G. ; Barenghi C. F. ; Galantucci L.

The reciprocal energy and enstrophy transfers between normal fluid and superfluid components dictate the overall dynamics of superfluid 4He including the generation, evolution and coupling of coherent structures, the distribution of energy among lengthscales, and the decay of turbulence. To better understand the essential ingredients of this interaction, we employ a numerical two-way model which self-consistently accounts for the back-reaction of the superfluid vortex lines onto the normal fluid. Here we focus on a prototypical laminar (non-turbulent) vortex configuration which is simple enough to clearly relate the geometry of the vortex line to energy injection and dissipation to/from the normal fluid: a Kelvin wave excitation on two vortex anti-vortex pairs evolving in (a) an initially quiescent normal fluid, and (b) an imposed counterflow. In (a), the superfluid injects energy and vorticity in the normal fluid. In (b), the superfluid gains energy from the normal fluid via the Donnelly-Glaberson instability.

Superfluid He-4 Thermal counterflow Energy transfer Fully-coupled dynamics
2024 Articolo in rivista open access

The wall effect in a plane counterflow channel

Galantucci L. ; Sciacca M.

In this paper, we study the influence of the boundary conditions of the velocity fields in superfluid helium counterflow experiments. To make progress, we perform numerical simulations where we allow a slip velocity of the viscous component at the walls, and observe how this impacts on velocity fields and density profiles of distribution of quantized vortices. We conclude that the presence of a slip velocity at the walls generates a more homogeneous vortex distribution throughout the channel.

counterflow channel liquid helium quantized vortices
2024 Contributo in volume (Capitolo o Saggio) restricted access

REDRAW: fedeRatED leaRning for humAn Wellbeing

Aversa, Rocco ; Bochicchio, Mario ; Branco, Dario ; Magliulo, Mario ; Orlando, Albina ; Pristner, Anna ; Tramontano, Adriano ; Schirinzi, Erika ; Siciliano, Gabriele ; Venticinque, Salvatore

The REDRAW project investigates the exploitation of the federated learning computing paradigm to improve the technologies adopted for the monitoring, diagnosis and treatment management of specific health conditions, developing approaches more respectful of the constraints of privacy, confidentiality and cybersecurity, which are still largely absent from the market. REDRAW proposes the study and fine-tuning of dynamic cloud-edge deployment techniques, which exploits Federated Learning (FL) models, in three real-world contexts, to improve the technological features of existing solutions, while respecting the strategic and non-functional constraints that characterize the Italian and European scenarios .

Computing paradigm Real-world Technological feature Treatment management
2024 Articolo in rivista open access

Predicting multiple sclerosis disease progression and outcomes with machine learning and MRI-based biomarkers: a review

Yousef H. ; Malagurski Tortei B. ; Castiglione F.

Multiple sclerosis (MS) is a demyelinating neurological disorder with a highly heterogeneous clinical presentation and course of progression. Disease-modifying therapies are the only available treatment, as there is no known cure for the disease. Careful selection of suitable therapies is necessary, as they can be accompanied by serious risks and adverse effects such as infection. Magnetic resonance imaging (MRI) plays a central role in the diagnosis and management of MS, though MRI lesions have displayed only moderate associations with MS clinical outcomes, known as the clinico-radiological paradox. With the advent of machine learning (ML) in healthcare, the predictive power of MRI can be improved by leveraging both traditional and advanced ML algorithms capable of analyzing increasingly complex patterns within neuroimaging data. The purpose of this review was to examine the application of MRI-based ML for prediction of MS disease progression. Studies were divided into five main categories: predicting the conversion of clinically isolated syndrome to MS, cognitive outcome, EDSS-related disability, motor disability and disease activity. The performance of ML models is discussed along with highlighting the influential MRI-derived biomarkers. Overall, MRI-based ML presents a promising avenue for MS prognosis. However, integration of imaging biomarkers with other multimodal patient data shows great potential for advancing personalized healthcare approaches in MS.

Biomarkers Deep learning Disability prediction Machine learning Magnetic resonance imaging Multiple sclerosis
2024 Articolo in rivista open access

Forum on immune digital twins: a meeting report

Laubenbacher R. ; Adler F. ; An G. ; Castiglione F. ; Eubank S. ; Fonseca L. L. ; Glazier J. ; Helikar T. ; Jett-Tilton M. ; Kirschner D. ; Macklin P. ; Mehrad B. ; Moore B. ; Pasour V. ; Shmulevich I. ; Smith A. ; Voigt I. ; Yankeelov T. E. ; Ziemssen T.

Medical digital twins are computational models of human biology relevant to a given medical condition, which are tailored to an individual patient, thereby predicting the course of disease and individualized treatments, an important goal of personalized medicine. The immune system, which has a central role in many diseases, is highly heterogeneous between individuals, and thus poses a major challenge for this technology. In February 2023, an international group of experts convened for two days to discuss these challenges related to immune digital twins. The group consisted of clinicians, immunologists, biologists, and mathematical modelers, representative of the interdisciplinary nature of medical digital twin development. A video recording of the entire event is available. This paper presents a synopsis of the discussions, brief descriptions of ongoing digital twin projects at different stages of progress. It also proposes a 5-year action plan for further developing this technology. The main recommendations are to identify and pursue a small number of promising use cases, to develop stimulation-specific assays of immune function in a clinical setting, and to develop a database of existing computational immune models, as well as advanced modeling technology and infrastructure.

Digital Twin
2024 Articolo in rivista open access

VISH-Pred: an ensemble of fine-tuned ESM models for protein toxicity prediction

Mall R. ; Singh A. ; Patel C. N. ; Guirimand G. ; Castiglione F.

Peptide- and protein-based therapeutics are becoming a promising treatment regimen for myriad diseases. Toxicity of proteins is the primary hurdle for protein-based therapies. Thus, there is an urgent need for accurate in silico methods for determining toxic proteins to filter the pool of potential candidates. At the same time, it is imperative to precisely identify non-toxic proteins to expand the possibilities for protein-based biologics. To address this challenge, we proposed an ensemble framework, called VISH-Pred, comprising models built by fine-tuning ESM2 transformer models on a large, experimentally validated, curated dataset of protein and peptide toxicities. The primary steps in the VISH-Pred framework are to efficiently estimate protein toxicities taking just the protein sequence as input, employing an under sampling technique to handle the humongous class-imbalance in the data and learning representations from fine-tuned ESM2 protein language models which are then fed to machine learning techniques such as Lightgbm and XGBoost. The VISH-Pred framework is able to correctly identify both peptides/proteins with potential toxicity and non-toxic proteins, achieving a Matthews correlation coefficient of 0.737, 0.716 and 0.322 and F1-score of 0.759, 0.696 and 0.713 on three non-redundant blind tests, respectively, outperforming other methods by over on these quality metrics. Moreover, VISH-Pred achieved the best accuracy and area under receiver operating curve scores on these independent test sets, highlighting the robustness and generalization capability of the framework. By making VISH-Pred available as an easy-to-use web server, we expect it to serve as a valuable asset for future endeavors aimed at discerning the toxicity of peptides and enabling efficient protein-based therapeutics.

deep learning ensemble method ESM2 models fine-tuning peptide toxicity protein toxicity
2024 Articolo in rivista open access

Computational Approach for Spatially Fractionated Radiation Therapy (SFRT) and Immunological Response in Precision Radiation Therapy

Castorina P. ; Castiglione F. ; Ferini G. ; Forte S. ; Martorana E.

The field of precision radiation therapy has seen remarkable advancements in both experimental and computational methods. Recent literature has introduced various approaches such as Spatially Fractionated Radiation Therapy (SFRT). This unconventional treatment, demanding high-precision radiotherapy, has shown promising clinical outcomes. A comprehensive computational scheme for SFRT, extrapolated from a case report, is proposed. This framework exhibits exceptional flexibility, accommodating diverse initial conditions (shape, inhomogeneity, etc.) and enabling specific choices for sub-volume selection with administrated higher radiation doses. The approach integrates the standard linear quadratic model and, significantly, considers the activation of the immune system due to radiotherapy. This activation enhances the immune response in comparison to the untreated case. We delve into the distinct roles of the native immune system, immune activation by radiation, and post-radiotherapy immunotherapy, discussing their implications for either complete recovery or disease regrowth.

immunotherapy in-silico model mathematical framework radiotherapy Spatially Fractionated Radiation Therapy
2024 Articolo in rivista open access

Predicting Antimicrobial Resistance Trends Combining Standard Linear Algebra with Machine Learning Algorithms

Castiglione F. ; Daugulis P. ; Mancini E. ; Oldenkamp R. ; Schultsz C. ; Vagale V.

Antimicrobial resistance prediction is a pivotal ongoing research activity that is currently being explored across various levels. In this context, we present the application of two prediction methods that model the antimicrobial resistance of Neisseria gonorrhoeae on the national level as an outcome of socio-economic processes. The methods use two different implementations of the principal component analysis combined with classification algorithms. Using these two methods, we generated forecasts concerning antimicrobial resistance of Neisseria gonorrhoeae, using publicly available databases encompassing over 200 countries from 1998 to 2021. Both approaches exhibit similar mean absolute averages and correlations when comparing available measurements with predictions. Steps of statistical analysis and applications are discussed, including population-weighted central tendencies, geographical correlations, time trends and error reduction possibilities.

AMR prevalence prediction antimicrobial resistance Neisseria gonorrhoea PCA principal component regression surveillance
2024 Articolo in rivista open access

Toward mechanistic medical digital twins: some use cases in immunology

Laubenbacher R. ; Adler F. ; An G. ; Castiglione F. ; Eubank S. ; Fonseca L. L. ; Glazier J. ; Helikar T. ; Jett-Tilton M. ; Kirschner D. ; Macklin P. ; Mehrad B. ; Moore B. ; Pasour V. ; Shmulevich I. ; Smith A. ; Voigt I. ; Yankeelov T. E. ; Ziemssen T.

A fundamental challenge for personalized medicine is to capture enough of the complexity of an individual patient to determine an optimal way to keep them healthy or restore their health. This will require personalized computational models of sufficient resolution and with enough mechanistic information to provide actionable information to the clinician. Such personalized models are increasingly referred to as medical digital twins. Digital twin technology for health applications is still in its infancy, and extensive research and development is required. This article focuses on several projects in different stages of development that can lead to specific—and practical–medical digital twins or digital twin modeling platforms. It emerged from a two-day forum on problems related to medical digital twins, particularly those involving an immune system component. Open access video recordings of the forum discussions are available.

immune digital twin medical digital twin personalized medicine review of digital twin projects roadmap
2024 Articolo in rivista open access

Mathematical modeling of the synergistic interplay of radiotherapy and immunotherapy in anti-cancer treatments

Castorina P. ; Castiglione F. ; Ferini G. ; Forte S. ; Martorana E. ; Giuffrida D.

Introduction While radiotherapy has long been recognized for its ability to directly ablate cancer cells through necrosis or apoptosis, radiotherapy-induced abscopal effect suggests that its impact extends beyond local tumor destruction thanks to immune response. Cellular proliferation and necrosis have been extensively studied using mathematical models that simulate tumor growth, such as Gompertz law, and the radiation effects, such as the linear-quadratic model. However, the effectiveness of radiotherapy-induced immune responses may vary among patients due to individual differences in radiation sensitivity and other factors.Methods We present a novel macroscopic approach designed to quantitatively analyze the intricate dynamics governing the interactions among the immune system, radiotherapy, and tumor progression. Building upon previous research demonstrating the synergistic effects of radiotherapy and immunotherapy in cancer treatment, we provide a comprehensive mathematical framework for understanding the underlying mechanisms driving these interactions.Results Our method leverages macroscopic observations and mathematical modeling to capture the overarching dynamics of this interplay, offering valuable insights for optimizing cancer treatment strategies. One shows that Gompertz law can describe therapy effects with two effective parameters. This result permits quantitative data analyses, which give useful indications for the disease progression and clinical decisions.Discussion Through validation against diverse data sets from the literature, we demonstrate the reliability and versatility of our approach in predicting the time evolution of the disease and assessing the potential efficacy of radiotherapy-immunotherapy combinations. This further supports the promising potential of the abscopal effect, suggesting that in select cases, depending on tumor size, it may confer full efficacy to radiotherapy.

Gompertz law abscopal effect immune response immunotherapy mathematical modeling radiotherapy
2024 Articolo in rivista open access

Expression of Network Medicine-Predicted Genes in Human Macrophages Infected with Leishmania major

Caixeta F. ; Martins V. D. ; Figueiredo A. B. ; Afonso L. C. C. ; Tieri P. ; Castiglione F. ; de Freitas L. M. ; Maioli T. U.

Leishmania spp. commonly infects phagocytic cells of the immune system, particularly macrophages, employing various immune evasion strategies that enable their survival by altering the intracellular environment. In mammals, these parasites establish persistent infections by modulating gene expression in macrophages, thus interfering with immune signaling and response pathways, ultimately creating a favorable environment for the parasite’s survival and reproduction. In this study, our objective was to use data mining and subsequent filtering techniques to identify the genes that play a crucial role in the infection process of Leishmania spp. We aimed to pinpoint genes that have the potential to influence the progression of Leishmania infection. To achieve this, we exploited prior, curated knowledge from major databases and constructed 16 datasets of human molecular information consisting of coding genes and corresponding proteins. We obtained over 400 proteins, identifying approximately 200 genes. The proteins coded by these genes were subsequently used to build a network of protein–protein interactions, which enabled the identification of key players; we named this set Predicted Genes. Then, we selected approximately 10% of Predicted Genes for biological validation. THP-1 cells, a line of human macrophages, were infected with Leishmania major in vitro for the validation process. We observed that L. major has the capacity to impact crucial genes involved in the immune response, resulting in macrophage inactivation and creating a conducive environment for the survival of Leishmania parasites.

gene expression Leishmania macrophages predicted genes
2024 Articolo in rivista restricted access

Dequantenhancement by spatial color algorithms

Sarti B. ; Ramella G. ; Rizzi A.

Spatial color algorithms (SCAs) are algorithms grounded in the retinex theory of color sensation that, mimicking the human visual system, perform image enhancement based on the spatial arrangement of the scene. Despite their established role in image enhancement, their potential as dequantizers has never been investigated. Here, we aim to assess the effectiveness of SCAs in addressing the dual objectives of color dequantization and image enhancement at the same time. To this end, we propose the term dequantenhancement. In this paper, through two experiments on a dataset of images, SCAs are evaluated through two distinct pathways: first, quantization followed by filtering to assess both dequantization and enhancement; and second, filtering applied to original images before quantization as further investigation of mainly the dequantization effect. The results are presented both qualitatively, with visual examples, and quantitatively, through metrics including the number of colors, retinal-like subsampling contrast (RSC), and structural similarity index (SSIM).

Color, Quantization, Dequantization, Image enhancement, HVS computational model, Spatial vision