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2023 Editoriale, Commentario, Contributo a Forum in rivista metadata only access

special Issue: Methods and Applications for Anomaly Detection

anomaly detection machine learning
2023 Articolo in rivista open access

Solution of the EEG inverse problem by random dipole sampling

L Della Cioppa ; M Tartaglione ; A Pascarella ; F Pitolli

Abstract. Electroencephalography (EEG) source imaging aims to reconstruct brainactivity maps from the neuroelectric potential difference measured on the skull. Toobtain the brain activity map, we need to solve an ill-posed and ill-conditionedinverse problem that requires regularization techniques to make the solution viable.When dealing with real-time applications, dimensionality reduction techniques can beused to reduce the computational load required to evaluate the numerical solutionof the EEG inverse problem. To this end, in this paper we use the random dipolesampling method, in which a Monte Carlo technique is used to reduce the numberof neural sources. This is equivalent to reducing the number of the unknownsin the inverse problem and can be seen as a first regularization step. Then, wesolve the reduced EEG inverse problem with two popular inversion methods, theweighted Minimum Norm Estimate (wMNE) and the standardized LOw Resolutionbrain Electromagnetic TomogrAphy (sLORETA). The main result of this paper is theerror estimates of the reconstructed activity map obtained with the randomized versionof wMNE and sLORETA. Numerical experiments on synthetic EEG data demonstratethe effectiveness of the random dipole sampling method.

EEG imagingunderdetermined inverse problem random sampling inversion method wMNE sLORETA
2023 Contributo in Atti di convegno metadata only access

A journey into brain imaging: from the MEG/EEG inverse problem to brain fingerprint

A Pascarella ; F Pitolli

Understanding brain function from magneto-electroencephalographic (M/EEG) measurements requires advanced mathematical and signal processing tools. Although the analysis of M/EEG data at sensors level sheds light on important brain mechanisms, full exploitation of the information contained in such brain data could be achieved by reconstructing the active neural sources from M/EEG measurements. This involves solving an ill-posed and ill-conditioned inverse problem in which not only the identification of the most suitable inversion method [1, 2] but also the calibration of the regularization parameters is of paramount importance. Once time series representing brain activity are available, a next step is to develop tools to extract meaningful information that characterizes brain activity [3, 4], for example, when the subject under study is affected by diseases that impair brain function. The mini-symposium brings together researchers from various disciplines who have developed methodologies that are being successfully used for the analysis of the M/EEG data, the solution of the underlying inverse problem and in the definition of brain fingerprint. The purpose is not only to present the latest research results in this area but also to create a fruitful environment for the development of new ideas.

brain imaging eeg meg
2023 Abstract in Atti di convegno metadata only access

Investigating the Impact of Signal-to-Noise Ratio on EEG Resting-State source reconstruction

F Leone ; A Caporali ; A Pascarella ; C Perciballi ; M Ottavia ; A Basti ; P Belardinelli ; L Marzetti ; G Di Lorenzo ; V Betti
EEG inverse problem regularization
2023 Abstract in Atti di convegno metadata only access

SESAME: a powerful Bayeisan method for Magneto/Electro-EnchephaloGraphy inverse problem

G Luria ; A Pascarella ; S Sommarivac A Sorrentino ; A Viani
MEG inverse problem bayesian methods monte carlo
2023 Abstract in Atti di convegno metadata only access

Randomized Inversion Methods for EEG imaging

L Della Cioppa ; M Tartaglione ; A Pascarella ; F Pitolli
eeg inverse problem
2023 Abstract in Atti di convegno metadata only access

Estimating hyper-parameters for an inverse problem in brain imaging

G Luria ; A Pascarella ; S Sommarivac A Sorrentino ; A Viani
meg inverse problem bayesian methods
2023 Abstract in Atti di convegno metadata only access

A Weather Generation Model To Evaluate The Impact Of Meteorological Variability On Crop Growth

Giacomo Varini ; Alberto Sorrentino ; Annalisa Pascarella
weather generation model
2023 Articolo in rivista open access

The IAS-MEEG Package: A Flexible Inverse Source Reconstruction Platform for Reconstruction and Visualization of Brain Activity from M/EEG Data

Calvetti D. ; Pascarella A. ; Pitolli F. ; Somersalo E. ; Vantaggi B.

We present a standalone Matlab software platform complete with visualization for the reconstruction of the neural activity in the brain from MEG or EEG data. The underlying inversion combines hierarchical Bayesian models and Krylov subspace iterative least squares solvers. The Bayesian framework of the underlying inversion algorithm allows to account for anatomical information and possible a priori belief about the focality of the reconstruction. The computational efficiency makes the software suitable for the reconstruction of lengthy time series on standard computing equipment. The algorithm requires minimal user provided input parameters, although the user can express the desired focality and accuracy of the solution. The code has been designed so as to favor the parallelization performed automatically by Matlab, according to the resources of the host computer. We demonstrate the flexibility of the platform by reconstructing activity patterns with supports of different sizes from MEG and EEG data. Moreover, we show that the software reconstructs well activity patches located either in the subcortical brain structures or on the cortex. The inverse solver and visualization modules can be used either individually or in combination. We also provide a version of the inverse solver that can be used within Brainstorm toolbox. All the software is available online by Github, including the Brainstorm plugin, with accompanying documentation and test data.

Bayesian framework Brain activity reconstruction Conditionally Gaussian prior Iterative Krylov solver Sensitivity weighting Sliced visualization
2022 Articolo in rivista open access

Functional Source Separation-Identified Epileptic Network: Analysis Pipeline

Olejarczyk Elzbieta ; Zappasodi Filippo ; Ricci Lorenzo ; Pascarella Annalisa ; Pellegrino Giovanni ; Paulon Luca ; Assenza Giovanni ; Tecchio Franca

This proof-of-concept (PoC) study presents a pipeline made by two blocks: 1. the identification of the network that generates interictal epileptic activity; and 2. the study of the time course of the electrical activity that it generates, called neurodynamics, and the study of its functional connectivity to the other parts of the brain. Network identification is achieved with the Functional Source Separation (FSS) algorithm applied to electroencephalographic (EEG) recordings, the neurodynamics quantified through signal complexity with the Higuchi Fractal Dimension (HFD), and functional connectivity with the Directed Transfer Function (DTF). This PoC is enhanced by the data collected before and after neuromodulation via transcranial Direct Current Stimulation (tDCS, both Real and Sham) in a single drug-resistant epileptic person. We observed that the signal complexity of the epileptogenic network, reduced in the pre-Real, pre-Sham, and post-Sham, reached the level of the rest of the brain post-Real tDCS. DTF changes post-Real tDCS were maintained after one month. The proposed approach can represent a valuable tool to enhance understanding of the relationship between brain neurodynamics characteristics, the effects of non-invasive brain stimulation, and epileptic symptoms.

Directed Transfer Function (DTF) EEG focal epilepsy Functional Source Separation (FSS) Higuchi Fractal Dimension (HFD) transcranial Direct Current Stimulation (tDCS)
2022 Articolo in rivista open access

Altered Brain Criticality in Schizophrenia: New Insights From Magnetoencephalography

Alamian Golnoush ; Lajnef Tarek ; Pascarella Annalisa ; Lina Jean Marc ; Knight Laura ; Walters James ; Singh Krish D ; Jerbi Karim

Schizophrenia has a complex etiology and symptomatology that is difficult to untangle. After decades of research, important advancements toward a central biomarker are still lacking. One of the missing pieces is a better understanding of how non-linear neural dynamics are altered in this patient population. In this study, the resting-state neuromagnetic signals of schizophrenia patients and healthy controls were analyzed in the framework of criticality. When biological systems like the brain are in a state of criticality, they are thought to be functioning at maximum efficiency (e.g., optimal communication and storage of information) and with maximum adaptability to incoming information. Here, we assessed the self-similarity and multifractality of resting-state brain signals recorded with magnetoencephalography in patients with schizophrenia patients and in matched controls. Schizophrenia patients had similar, although attenuated, patterns of self-similarity and multifractality values. Statistical tests showed that patients had higher values of self-similarity than controls in fronto-temporal regions, indicative of more regularity and memory in the signal. In contrast, patients had less multifractality than controls in the parietal and occipital regions, indicative of less diverse singularities and reduced variability in the signal. In addition, supervised machine-learning, based on logistic regression, successfully discriminated the two groups using measures of self-similarity and multifractality as features. Our results provide new insights into the baseline cognitive functioning of schizophrenia patients by identifying key alterations of criticality properties in their resting-state brain data.

complexity criticality machine-learning magnetoencephalography multifractal analysis resting-state scale-free dynamics
2022 Articolo in rivista open access

Normalized compression distance to measure cortico-muscular synchronization

Annalisa Pascarella ; Eugenia Gianni ; Matteo Abbondanza ; Karolina Armonaite ; Francesca Pitolli ; Massimo Bertoli ; Teresa L'Abbate ; Joy Grifoni ; Domenico Vitulano ; Vittoria Bruni ; Livio Conti ; Luca Paulon ; Franca Tecchio

The neuronal functional connectivity is a complex and non-stationaryphenomenon creating dynamic networks synchronization determining thebrain states and needed to produce tasks. Here, as a measure that quantifiesthe synchronization between the neuronal electrical activity of two brainregions, we used the normalized compression distance (NCD), which is thelength of the compressed file constituted by the concatenated two signals,normalized by the length of the two compressed files including each singlesignal. To test the NCD sensitivity to physiological properties, we used NCDto measure the cortico-muscular synchronization, a well-known mechanismto control movements, in 15 healthy volunteers during a weak handgrip.Independently of NCD compressor (Huffman or Lempel Ziv), we foundout that the resulting measure is sensitive to the dominant-non dominantasymmetry when novelty management is required (p = 0.011; p = 0.007,respectively) and depends on the level of novelty when moving the non-dominant hand (p = 0.012; p = 0.024). Showing lower synchronization levelsfor less dexterous networks, NCD seems to be a measure able to enrich theestimate of functional two-node connectivity within the neuronal networksthat control the body.

normalized compression distance (NCD) electrophysiology handedness neuronal synchronization feedback
2022 Articolo in rivista metadata only access

Parameter estimation tools for cardiovascular flow modeling of fetal circulation

Usually, clinicians assess the correct hemodynamic behavior and fetal wellbeing during the gestational age thanks to their professional expertise, with the support of some indices defined for Doppler fetal waveforms. Although this approach has demonstrated to be satisfactory in the most of the cases, it can be largely improved with the aid of more advanced techniques, i.e. numerical analysis and simulation. Another key aspect limiting the analysis is that clinicians rely on a limited number of Doppler waveforms observed during the clinical examination. Moreover, the use of simple velocimetric indicators for deriving possible malfunctions of the fetal cardiovascular system can be misleading, being the fetal assessment based on a mere statistical analysis (comparison with physiological ranges), without any deep physiopathological interpretations of the observed hemodynamic changes. The use of a lumped mathematical model, properly describing the entire fetal cardiovascular system, would be absolutely helpful in this context: by targeting physiological model parameters on the clinical reliefs, we could gain deep insights of the full system. The calibration of model parameters may also help in formulating patient-specific early diagnosis of fetal pathologies. In the present work, we develop a robust parameter estimation algorithm based on two different optimization methods using synthetic data. In particular, we deal with the inverse problem of recognizing the most significant parameters of a lumped fetal circulation model by using time tracings of fetal blood flows and pressures obtained by the model. This represents a first methodological work for the assessment of the accuracy in the identification of model parameters of an algorithm based on closed-loop mathematical model of fetal circulation and opens the way to the application of the algorithm to clinical data.

Fetal circulatory system lumped parameter model Differential algebraic equations Simulation and numerical modeling Parameter estimation techniques Inverse problem
2022 Articolo in rivista open access

Automated Detection of Cognitive Performance and Resilience Changes in Former Professional American Football Players following the Administration of a Hemp Extract

Amico F. ; Pascarella A. ; Danev S. ; Ruan C. -H.

Introduction. In high-contact sport athletes, repetitive head trauma might be linked to permanent brain damage. In particular, findings in professional American football players indicate that brain injury is often associated with long-term cognitive slowing. In this context, hemp extracts might have beneficial effects. Methods. Forty-two former professional American football players were recruited (age = 49.6 ± 9.8 years). Before or immediately after the oral administration of a THC-free hemp extract, the following measures were acquired: 1) the median theta/beta ratio and posterior peak alpha frequency (PAF) during resting state; 2) P200 and P300b latencies as well as reaction times (RT) during performance of a Go/NoGo task. Results. After treatment, a smaller median theta/beta ratio (p < .01) was detected. An onset latency reduction was also found for the P200 (p < .01) and P300b (p < .05) measures, which was accompanied by smaller RT variances (p < .05). Finally, a positive correlation between RT measures and P300b latencies was found only after treatment. Conclusion. The administration of THC-free hemp extracts in former professional high-impact athletes might have beneficial effects on both cognitive performance and emotion regulation. Also, recent technological advances in EEG detection and analysis could play an important role in the management of patients with sport-related brain injuries.

American football CBD CBG EEG ERP sports concussion
2021 Working paper metadata only access

Altered brain criticality in Schizophrenia: New insights from MEG

Golnoush Alamian ; Tarek Lajnef ; Annalisa Pascarella ; JeanMarc Lina ; Laura Knight ; James Walters ; Krish D Singh ; Karim Jerbi

Schizophrenia has a complex etiology and symptomatology that is difficult to untangle. After decades of research, important advancements towards a central biomarker are still lacking. One of the missing pieces is a better understanding of how non-linear neural dynamics are altered in this patient population. In this study, the resting-state neuromagnetic signals of schizophrenia patients and healthy controls were analyzed in the framework of criticality. When biological systems like the brain are in a state of criticality, they are thought to be functioning at maximum efficiency (e.g., optimal communication and storage of information) and with maximum adaptability to incoming information. Here, we assessed the self-similarity and multifractality of resting-state brain signals recorded with magnetoencephalography in patients with schizophrenia patients and in matched controls. Our analysis showed a clear ascending, rostral to caudal gradient of self-similarity values in healthy controls, and an opposite gradient for multifractality (descending values, rostral to caudal). Schizophrenia patients had similar, although attenuated, gradients of self-similarity and multifractality values. Statistical tests showed that patients had higher values of self-similarity than controls in fronto-temporal regions, indicative of more regularity and memory in the signal. In contrast, patients had less multifractality than controls in the parietal and occipital regions, indicative of less diverse singularities and reduced variability in the signal. In addition, supervised machine-learning, based on logistic regression, successfully discriminated the two groups using measures of self-similarity and multifractality as features. Our results provide new insights into the baseline cognitive functioning of schizophrenia patients by identifying key alterations of criticality properties in their resting-state brain data.

Complexity criticality multifractal analysis machine-learning magnetoencephalography resting-state scale-free schizophrenia
2021 Working paper metadata only access

An in-vivo validation of ESI methods with focal sources

Annalisa Pascarella ; Ezequiel Mikulan ; Federica Sciacchitano ; Simone Sarasso ; Annalisa Rubino ; Ivana Sartorie ; Francesco Cardinale ; Flavia Zauli ; Pietro Avanzini ; Lino Nobili ; Andrea Pigorini ; Alberto Sorrentino

Electrical source imaging (ESI) aims at reconstructing the electrical brain activity from measurements of the electric field on the scalp. Even though the localization of single focal sources should be relatively straightforward, different methods provide diverse solutions due to the different underlying assumptions. Furthermore, their input parameter(s) further affects the solution provided by each method, making localization even more challenging. In addition, validations and comparisons are typically performed either on synthetic data or through post-operative outcomes, in both cases with considerable limitations. We use an in-vivo high-density EEG dataset recorded during intracranial single pulse electrical stimulation, in which the true sources are substantially dipolar and their locations are known. We compare ten different ESI methods under multiple choices of input parameters, to assess the accuracy of the best reconstruction, as well as the impact of the parameters on the localization performance. Best reconstructions often fall within 1 cm from the true source, with more accurate methods outperforming less accurate ones by 1 cm, on average. Expectedly, dipolar methods tend to outperform distributed methods. Sensitivity to input parameters varies widely between methods. Depth weighting played no role for three out of six methods implementing it. In terms of regularization parameters, for several distributed methods SNR=1 unexpectedly turned out to be the best choice among the tested ones. Our data show similar levels of accuracy of ESI techniques when applied to "conventional" (32 channels) and dense (64, 128, 256 channels) EEG recordings. Overall findings reinforce the importance that ESI may have in the clinical context, especially when applied to identify the surgical target in potential candidates for epilepsy surgery.

ESI EEG inverse methods
2021 Articolo in rivista open access

Mining the Mind: Linear Discriminant Analysis of MEG Source Reconstruction Time Series Supports Dynamic Changes in Deep Brain Regions During Meditation Sessions

Calvetti Daniela ; Johnson Brian ; Pascarella Annalisa ; Pitolli Francesca ; Somersalo Erkki ; Vantaggi Barbara

Meditation practices have been claimed to have a positive effect on the regulation of mood and emotions for quite some time by practitioners, and in recent times there has been a sustained effort to provide a more precise description of the influence of meditation on the human brain. Longitudinal studies have reported morphological changes in cortical thickness and volume in selected brain regions due to meditation practice, which is interpreted as an evidence its effectiveness beyond the subjective self reporting. Using magnetoencephalography (MEG) or electroencephalography to quantify the changes in brain activity during meditation practice represents a challenge, as no clear hypothesis about the spatial or temporal pattern of such changes is available to date. In this article we consider MEG data collected during meditation sessions of experienced Buddhist monks practicing focused attention (Samatha) and open monitoring (Vipassana) meditation, contrasted by resting state with eyes closed. The MEG data are first mapped to time series of brain activity averaged over brain regions corresponding to a standard Destrieux brain atlas. Next, by bootstrapping and spectral analysis, the data are mapped to matrices representing random samples of power spectral densities in ?, ?, ?, and ? frequency bands. We use linear discriminant analysis to demonstrate that the samples corresponding to different meditative or resting states contain enough fingerprints of the brain state to allow a separation between different states, and we identify the brain regions that appear to contribute to the separation. Our findings suggest that the cingulate cortex, insular cortex and some of the internal structures, most notably the accumbens, the caudate and the putamen nuclei, the thalamus and the amygdalae stand out as separating regions, which seems to correlate well with earlier findings based on longitudinal studies.

Activity map Deep sources Linear discriminant analysis Meditation MEG inverse problem Spectral analysis
2021 Articolo in rivista open access

Neural oscillations track natural but not artificial fast speech: Novel insights from speech-brain coupling using MEG

Hincapié Casas Ana Sofía ; Lajnef Tarek ; Pascarella Annalisa ; GuiraudVinatea Hélène ; Laaksonen Hannu ; Bayle Dimitri ; Jerbi Karim ; Boulenger Véronique

Neural oscillations contribute to speech parsing via cortical tracking of hierarchical linguistic structures, including syllable rate. While the properties of neural entrainment have been largely probed with speech stimuli at either normal or artificially accelerated rates, the important case of natural fast speech has been largely overlooked. Using magnetoencephalography, we found that listening to naturally-produced speech was associated with cortico-acoustic coupling, both at normal (~6 syllables/s) and fast (~9 syllables/s) rates, with a corresponding shift in peak entrainment frequency. Interestingly, time-compressed sentences did not yield such coupling, despite being generated at the same rate as the natural fast sentences. Additionally, neural activity in right motor cortex exhibited stronger tuning to natural fast rather than to artificially accelerated speech, and showed evidence for stronger phase-coupling with left temporo-parietal and motor areas. These findings are highly relevant for our understanding of the role played by auditory and motor cortex oscillations in the perception of naturally produced speech.

Cortico-acoustic coupling Magnetoencephalography (MEG) Natural speech Neural entrainment Neuronal Oscillations Speech processing Syllable rate
2021 Abstract in Atti di convegno metadata only access

On the feasibility of random sampling for EEG inverse problem

Della Cioppa L ; Pascarella A ; Pitolli F ; Tartaglione ; M
MEG inverse problem random sampling
2021 Contributo in Atti di convegno metadata only access

Insight Onto the Utility of Magnetoencephalography and Electroencephalography for Studying Brain Disorders

MagnetoEncephaloGraphy (MEG) and ElectroEncephaloGraphy (EEG) are the most common non-invasive brain imaging techniques for monitoring the electrical brain activity with millisecond resolution. Due to their high, millisecond, temporal resolution, these techniques are also the most suitable for studying the dynamic interplay of between brain regions during information processing. In clinical settings, MEG and EEG are valuable methods for the pre-surgical evaluation of patients with pharmaco-resistant epilepsy. The localization of epileptogenic zone (EZ) provided by these techniques can avoid or guide invasive intracranial recordings. More recently, there is has been a growing interest in exploiting leveraging these techniques as a crucial tool to advance our understanding of the pathophysiological mechanisms of major neuropsychiatric disorders and neurological diseases. This symposium offers an overview of very recent studies on the use ofwhich employed MEG and EEG as valid tools to investigate brain disorders. In particularSpecifically, the five talks will provide important insights on new methodological approaches to characterize brain dysfunctions in different pathological conditions. We will focus on : (1) emerging tool to characterize irritative zones in epileptic patients and to detect in a semi automatic way epileptiform abnormalities during EEG sleep recordings ina semi-automatic way; (2) two different methodological approaches to evaluate frequency specific alterations of brain activity and connectivity in schizoprenia and glioma patients; and (3) using machine-learning methods for identificationto identify EEG predictors of dementia in Parkinson.

inverse problem meg connectivity brain disorders