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2016 Articolo in rivista metadata only access

On metastability and Markov state models for non-stationary molecular dynamics

Koltai P ; Ciccotti G ; Schutte C

Unlike for systems in equilibrium, a straightforward definition of a metastable set in the non-stationary, non-equilibrium case may only be given case-by-case-and therefore it is not directly useful any more, in particular in cases where the slowest relaxation time scales are comparable to the time scales at which the external field driving the system varies. We generalize the concept of metastability by relying on the theory of coherent sets. A pair of sets A and B is called coherent with respect to the time interval [t(1),t(2)] if (a) most of the trajectories starting in A at t(1) end up in B at t(2) and (b) most of the trajectories arriving in B at t(2) actually started from A at t(1). Based on this definition, we can show how to compute coherent sets and then derive finite-time non-stationary Markov state models. We illustrate this concept and its main differences to equilibrium Markov state modeling on simple, one-dimensional examples.

Chemistry Physical; Physics Atomic Molecular & Chemical
2016 Articolo in rivista metadata only access

On the establishment of thermal diffusion in binary Lennard-Jones liquids

Ferrario M ; Bonella S ; Ciccotti G

The establishment of thermal diffusion in an Ar-Kr Lennard-Jones mixture is investigated via dynamical non equilibrium molecular dynamics [G. Ciccotti, G. Jacucci, Phys. Rev. Lett. 35, 789 (1975)]. We observe, in particular, the evolution of the density and temperature fields of the system following the onset of the thermal gradient. In stationary conditions, we also compute the Soret coefficient of the mixture. This study confirms that dynamical non equilibrium molecular dynamics is an effective tool to gather information on transient phenomena, even though the full evolution of the mass and energy fluxes associated to the temperature and density fields requires, in this case, a more substantial numerical effort than the one employed here.

MOLECULAR-DYNAMICS; IRREVERSIBLE-PROCESSES; STATISTICAL-MECHANICS; CONDUCTION; INTERFACE
2016 Articolo in rivista metadata only access

Additive model selection

Amato U ; Antoniadis A ; DeFeis I

We study sparse high dimensional additive model fitting via penalization with sparsity-smoothness penalties. We review several existing algorithms that have been developed for this problem in the recent literature, highlighting the connections between them, and present some computationally efficient algorithms for fitting such models. Furthermore, using reasonable assumptions and exploiting recent results on group LASSO-like procedures, we take advantage of several oracle results which yield asymptotic optimality of estimators for high-dimensional but sparse additive models. Finally, variable selection procedures are compared with some high-dimensional testing procedures available in the literature for testing the presence of additive components.

Additive models · Dimension reduction · Penalization · Hypothesis test · Backfitting
2016 Contributo in Atti di convegno metadata only access

Jensen shannon divergence as reduced reference measure for image denoising

This paper focuses on the use the Jensen Shannon divergence for guiding denoising. In particular, it aims at detecting those image regions where noise is masked; denoising is then inhibited where it is useless from the visual point of view. To this aim a reduced reference version of the Jensen Shannon divergence is introduced and it is used for determining a denoising map. The latter separates those image pixels that require to be denoised from those that have to be leaved unaltered. Experimental results show that the proposed method allows to improve denoising performance of some simple and conventional denoisers, in terms of both peak signal to noise ratio (PSNR) and structural similarity index (SSIM). In addition, it can contribute to reduce the computational effort of some performing denoisers, while preserving the visual quality of denoised images.

Computer vision; Signal to noise ratio Computational effort; Image pixels; Image regions; Jensen-Shannon divergence; Peak signal to noise ratio; Reduced reference; Structural similarity indices (SSIM); Visual qualities
2016 Contributo in volume (Capitolo o Saggio) metadata only access

Automatic and Noninvasive Indoor Air Quality Control in HVAC Systems

M C Basile ; V Bruni ; F Buccolini ; D De Canditiis ; S Tagliaferri ; D Vitulano

This paper presents a methodology for assessing and monitoring the cleaning state of a heating, ventilation, and air conditioning (HVAC) system of a building. It consists of a noninvasive method for measuring the amount of dust in the whole ventilation system, that is, the set of filters and air ducts. Specifically, it defines the minimum amount of measurements, their time table, locations, and acquisition conditions. The proposed method promotes early intervention on the system and it guarantees high indoor air quality and proper HVAC working conditions. The effectiveness of the method is proved by some experimental results on different study cases.

HVAC data prediction and regularization
2016 Abstract in Atti di convegno metadata only access

Some applications of the wavelet transform with signal-dependent dilation factor

Time-scale transforms play a fundamental role in the compact representation of signals and images [1]. Non linear time representation provided a significant contribution to the definition of more flexible and adaptive transforms. However, in many applications signals are better characterized in the frequency domain. In particular, frequency distribution in the frequency axis is strictly dependent on the signal under study. On the contrary, frequency axis partition provided by conventional transforms obeys more rigid rules. It would be then desirable to have a transform able to adapt to the frequency content of the signal under study, i.e. having a changing Q factor. The rational dilation wavelet transform [2, 3] (RDWT) is a flexible tool that allows to change the dilation factor at each step of the transformaswell as the analyzingwindowfunction, by maintaining the structure and properties of the classical wavelet transform, which is implemented through perfect reconstruction filter banks. Some examples concerning the way of selecting significant scales, i.e. central frequencies and bandwidths of the filter bank, in different applications, including image denoising, deblurring and fusion, will be shown. The properties of the corresponding adaptive transformwill be also discussed.

wavelet transform contrast sensitivity function image denoising image deblurring
2016 Articolo in rivista metadata only access

Estimation of delta-contaminated density of the random intensity of Poisson data

Daniela De Canditiis ; Marianna pensky

In the present paper, we constructed an estimator of a delta contaminated mixing density function $g(\lam)$ of an intensity $\lambda$ of the Poisson distribution. The estimator is based on an expansion of the continuous portion $g_0(\lambda)$ of the unknown pdf over an overcomplete dictionary with the recovery of the coefficients obtained as the solution of an optimization problem with Lasso penalty. In order to apply Lasso technique in the, so called, prediction setting where it requires virtually no assumptions on the dictionary and, moreover, to ensure fast convergence of Lasso estimator, we use a novel formulation of the optimization problem based on the inversion of the dictionary elements. We formulate conditions on the dictionary and the unknown mixing density that yield a sharp oracle inequality for the norm of the difference between $g_0 (\lambda)$ and its estimator and, thus, obtain a smaller error than in a minimax setting. Numerical simulations and comparisons with the Laguerre functions based estimator recently constructed by \cite{Comte} also show advantages of our procedure. At last, we apply the technique developed in the paper to estimation of a delta contaminated mixing density of the Poisson intensity of the Saturn's rings data.

Mixing density - empirical Bayes- Lasso penalty
2016 Brevetto di invenzione industriale metadata only access

Microscopio confocale e relativo procedimento di acquisizione ed elaborazione di immagini

Domenico Vitulano ; Vittoria Bruni ; Andrea Santinelli ; Vincenzo Ricco
Microscopio confocale aumento delle arisoluzione di immagini
2016 Articolo in rivista metadata only access

Corrigendum: "Boundedness of solutions to anisotropic variational problems"

We correct an error in the proof of Theorem 4.1 of the paper "Boundedness of solutions to anisotropic variational problems" [Comm. Part. Diff. Eq. 36 (2011); 470-486].

Anisotropic equations; Anisotropic functionals; Boundedness of solutions; Orlicz spaces; Rearrangements; Symmetrization
2016 Rapporto tecnico metadata only access

Long-range hydrodynamic effect due to a single vesicle in linear flow

Eldad Afik ; Antonio Lamura ; Victor Steinberg

Vesicles are involved in a vast variety of transport processes in living organisms. Additionally, they serve as a model for the dynamics of cell suspensions. Predicting the rheological properties of their suspensions is still an open question, as even the interaction of pairs is yet to be fully understood. Here we analyse the effect of a single vesicle, undergoing tank-treading motion, on its surrounding shear flow by studying the induced disturbance field $\delta \vec{V}$, the difference between the velocity field in its presence and absence. The comparison between experiments and numerical simulations reveals an impressive agreement. Tracking ridges in the disturbance field magnitude landscape, we identify the principal directions along which the velocity difference field is analysed in the vesicle vicinity. The disturbance magnitude is found to be significant up to about 4 vesicles radii and can be described by a power law decay with the distance $d$ from the vesicle $ \| \delta \vec{V} \| \propto d^{-3/2}$. This is consistent with previous experimental results on the separation distance between two interacting vesicles under similar conditions, for which their dynamics is altered. This is an indication of vesicles long-range effect via the disturbance field and calls for the proper incorporation of long-range hydrodynamic interactions when attempting to derive rheological properties of vesicle suspensions.

Membranes bilayers vesicles biological fluid dynamics
2016 Contributo in volume (Capitolo o Saggio) metadata only access

A Collaborative Decisional System to Support a Business Model for the Development of Charging Infrastructure

Ianniello Giuseppe ; Piccarozzi Michela ; Baffo Ilaria ; Stecca Giuseppe ; Carotenuto Pasquale

The obstacles to the E-Mobility (EM)'s development are widely discussed both in scientific and in industrial fields. Approaches to overcome these obstacles are still not consolidate. At the same time, it is not so clear, what Business Models (BM) are more sustainable for the owners of Charging Infrastructure (CI). With the aim to support the development of charging network (CN), the authors propose a new BM based on intelligent, collaborative and digital services for all actors of the value chain. The implementation of this BM starts with the development of a decisional structure (DS) and the sharing of data and information among all operators that are involved into the charging process. The main elements of the model are explained and the first results of implementation are given. Future development are discussed to enrich the research and to supply at industrial field a useful tool to face decisions in the real context of CNs.

Collaborative business models Service systems ICT oriented Optimization Decision support system
2016 Contributo in Atti di convegno metadata only access

Multi Attributes approach for tourist trips design

Baffo I ; Carotenuto P ; Petrillo A ; De Felice ; F

The authors propose a Multi Attributes approach to meet the demand of personalized tourist tours into cultural cities. Respecting to others works present into the literature, in this paper the decisional process includes two phases and a high number of variables that don't increase the complexity of the problem. A real application in an Italian city, Florence, is presented to demonstrate the great potential of this system into real context. The first phase of optimization is solved applying an innovative Genetic Algorithm, the second one a Multi Criteria Method, Analytic Hierarchy Process (AHP). The combination of these two approach gives flexibility to the system with respect to number of variables and allow to return a good solution for tourist in few second of computational time.

Orienteering Problem Car Sharing Multicriteria
2016 Articolo in rivista metadata only access

Coupling of Smoothed Particle Hydrodynamics with Finite Volume method for free-surface flows

A new algorithm for the solution of free surface flows with large front deformation and fragmentation is presented. The algorithm is obtained by coupling a classical Finite Volume (FV) approach, that discretizes the Navier-Stokes equations on a block structured Eulerian grid, with an approach based on the Smoothed Particle Hydrodynamics (SPH) method, implemented in a Lagrangian framework. The coupling procedure is formulated in such a way that each solver is applied in the region where its intrinsic characteristics can be exploited in the most efficient and accurate way: the FV solver is used to resolve the bulk flow and the wall regions, whereas the SPH solver is implemented in the free surface region to capture details of the front evolution. The reported results clearly prove that the combined use of the two solvers is convenient from the point of view of both accuracy and computing time.

Coupling algorithms Domain decomposition Finite Volume method Free-surface flows Smoothed Particle Hydrodynamics
2016 Articolo in rivista metadata only access

Assessment of blockage effects in wind tunnel testing of wind turbines

S Zaghi ; R MuscariA Di Mascio

The aim of the present paper is the analysis of simplified boundary conditions to be used in numerical simulations, to take into account blockage effects for wind tunnel experiments of large scale wind tur- bines. The goal is the development of an efficient and reliable tool to be used to correct data obtained from experiments where the blockage coefficient is high and/or the turbine is highly loaded, for which traditional correction coefficients (derived from the Glauert theory or its more recent versions) fail. Numerical simulations of the flow around a three-bladed model-scale wind turbine with horizontal axis are reported; in all test cases, the turbine diameter is comparable with test section dimensions, and therefore blockage effects are significant. The actual experiments were approximated numerically with a simplified wind tunnel geometry, that retains the symmetries of the isolated turbine simulation in a rotating frame and therefore allows steady state computations. To this end, two circular wind tunnel were tested: for the first, the radius was chosen to retain the same cross-section as the actual wind tunnel; in the second, its was set to be equal to half of the smallest cross-section dimension. The aerodynamic performances of the turbine, in terms of power and thrust coefficients, are analyzed and compared with available experimental data. Detailed analysis of the flow in the wake is also reported. Analogous simulations in an unbounded domain are also reported.

Wind energy Wind turbine Wind turbine wake Blockage CFD
2016 Articolo in rivista metadata only access

A critical assessment of methods to recover information from averaged data

Ravera E ; Sgheri L ; Parigi G ; Luchinat C

Conformational heterogeneity is key to the function of many biomacromolecules, but only a few groups have tried to characterize it until recently. Now, thanks to the increased throughput of experimental data and the increased computational power, the problem of the characterization of protein structural variability has become more and more popular. Several groups have devoted their efforts in trying to create quantitative, reliable and accurate protocols for extracting such information from averaged data. We analyze here different approaches, discussing strengths and weaknesses of each. All approaches can roughly be clustered into two groups: Those satisfying the maximum entropy principle and those recovering ensembles composed of a restricted number of molecular conformations. In the first case, the solution focuses on the features that are common to all the infinite solutions satisfying the experimental data; in the second case, the reconstructed ensemble shows the conformational regions where a large probability can be placed. The upper limits for conformational probabilities (MaxOcc) can also be calculated. We also give an overview of the mainstream experimental observables, with considerations on the assumptions underlying their usage.

protein folding nmr spectroscopy
2016 Presentazione / Comunicazione non pubblicata (convegno, evento, webinar...) metadata only access

Gradient estimates for nonlinear elliptic equations in the plane

Angela Alberico ; Andrea Cianchi ; Carlo Sbordone

The problem is addressed of the maximal integrability of the gradient of solutions to quasilinear elliptic equations, with merely measurable coefficients, in two variables. Optimal results are obtained in the framework of Orlicz spaces, and in the more general setting of all rearrangement-invariant spaces. Applications to special instances are exhibited, which provide new gradient bounds, or improve certain results available in the literature.

Quasilinear elliptic equations Measurable coefficients Gradient regularity Rearrangement-invariant spaces Orlicz spaces.
2016 Curatela di Atti di convegno metadata only access

The amber roads. The ancient cultural and commercial communication between the peoples

Cellarosi PL ; Chellini R ; Martini F ; Montanaro AC ; Sarti L ; Capozzi RM

Sono state esposte le sintesi delle conoscenze scientifiche acquisite sino ad oggi sulle Antiche Vie dell'Ambra, dal Mesolitico fino all'Antica Roma e dal Mar Baltico all'Europa Meridionale, al Mar Nero ed al Medio Oriente, con riferimenti ai ritrovamenti più recenti, ai giacimenti, con particolare riguardo all'ambra baltica, e sono state avanzate contemporaneamente ipotesi o riferimenti sui tragitti relativi. Una particolare evidenza è stata data alle vie che attraverso lo scambio commerciale hanno determinato la diffusione delle diverse culture fra i popoli e quindi maggior valore assumono in questo contesto le antichissime vie di epoche in cui i contatti e la comunicazione fra i popoli erano in dipendenza soprattutto delle vie del commercio. Grande importanza hanno assunto, alla luce delle superiori considerazioni, le vie che in epoca protostorica, ed in particolare nelle età del Bronzo e del Ferro, hanno consentito e caratterizzato i commerci dell'Ambra, oltreché di altri materiali, dal Mar Baltico, all'Adriatico, all'Egeo, al Mar Nero ed al Medio Oriente, mettendo in contatto popoli e culture completamente diversi fra loro, contribuendo senza dubbio allo sviluppo delle civiltà e delle conoscenze. Le vie di pace, come quelle dell'ambra, hanno sempre generato cultura.

amber ancient roads proceedings
2016 Articolo in rivista metadata only access

Semi-spectral method for the Wigner equation

Furtmaier O ; Succi S ; Mendoza M

We propose a numerical method to solve the Wigner equation in quantum systems of spinless, non-relativistic particles. The method uses a spectral decomposition into L-2(R-d) basis functions in momentum-space to obtain a system of first-order advection-reaction equations. The resulting equations are solved by splitting the reaction and advection steps so as to allow the combination of numerical techniques from quantum mechanics and computational fluid dynamics by identifying the skew-hermitian reaction matrix as a generator of unitary rotations. The method is validated for the case of particles subject to a one-dimensional (an-)harmonic and Morse potential using finite-differences for the advection part. Thereby, we verify the second order of convergence and observe non-classical behavior in the evolution of the Wigner function. (C) 2015 Elsevier Inc. All rights reserved.

Wigner equation Spectral method Reaction-advection
2016 Articolo in rivista metadata only access

Cooperativity flows and shear-bandings: a statistical field theory approach

Benzi R ; Sbragaglia M ; Bernaschi M ; Succi S ; Toschi F

Cooperativity effects have been proposed to explain the non-local rheology in the dynamics of soft jammed systems. Based on the analysis of the free-energy model proposed by L. Bocquet, A. Colin and A. Ajdari, Phys. Rev. Lett., 2009, 103, 036001, we show that cooperativity effects resulting from the nonlocal nature of the fluidity (inverse viscosity) are intimately related to the emergence of shear-banding configurations. This connection materializes through the onset of inhomogeneous compact solutions (compactons), wherein the fluidity is confined to finite-support subregions of the flow and strictly zero elsewhere. The compacton coexistence with regions of zero fluidity ("non-flowing vacuum") is shown to be stabilized by the presence of mechanical noise, which ultimately shapes up the equilibrium distribution of the fluidity field, the latter acting as an order parameter for the flow-noflow transitions occurring in the material.

Lattice Boltzmann
2016 Articolo in rivista metadata only access

A fluid dynamics multidimensional model of biofilm growth: stability, influence of environment and sensitivity

Clarelli F ; Di Russo C ; Natalini R ; Ribot M

In this article, we study in detail the fluid dynamics system proposed in Clarelli et al. (2013, J. Math. Biol., 66, 1387-1408) to model the formation of cyanobacteria biofilms. After analysing the linear stability of the unique non-trivial equilibrium of the system, we introduce in the model the influence of light and temperature, which are two important factors for the development of a cyanobacteria biofilm. Since the values of the coefficients we use for our simulations are estimated through information found in the literature, some sensitivity and robustness analyses on these parameters are performed. All these elements enable us to control and to validate the model we have already derived and to present some numerical simulations in the 2D and the 3D cases.

fluid dynamics model hyperbolic equations phototrophic biofilms sensitivity stability